Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LOY41_RS22620 Genome accession   NZ_CP087187
Coordinates   5038664..5039881 (+) Length   405 a.a.
NCBI ID   WP_024014342.1    Uniprot ID   V8R166
Organism   Pseudomonas atacamensis strain B21-026     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5033664..5044881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY41_RS22600 (LOY41_22565) - 5035127..5035426 (+) 300 WP_039761633.1 DUF2845 domain-containing protein -
  LOY41_RS22605 (LOY41_22570) - 5035662..5036015 (-) 354 WP_016773155.1 BON domain-containing protein -
  LOY41_RS22610 (LOY41_22575) pilA/pilAI 5036312..5036734 (-) 423 WP_041477820.1 pilin Machinery gene
  LOY41_RS22615 (LOY41_22580) pilB 5036961..5038661 (+) 1701 WP_073475466.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LOY41_RS22620 (LOY41_22585) pilC 5038664..5039881 (+) 1218 WP_024014342.1 type II secretion system F family protein Machinery gene
  LOY41_RS22625 (LOY41_22590) pilD 5039883..5040755 (+) 873 WP_122698545.1 A24 family peptidase Machinery gene
  LOY41_RS22630 (LOY41_22595) coaE 5040752..5041375 (+) 624 WP_122706074.1 dephospho-CoA kinase -
  LOY41_RS22635 (LOY41_22600) yacG 5041372..5041572 (+) 201 WP_016773149.1 DNA gyrase inhibitor YacG -
  LOY41_RS22640 (LOY41_22605) - 5041580..5041795 (-) 216 WP_016773148.1 hypothetical protein -
  LOY41_RS22645 (LOY41_22610) - 5041861..5042550 (-) 690 WP_016773147.1 energy-coupling factor ABC transporter permease -
  LOY41_RS22650 (LOY41_22615) - 5042668..5043294 (+) 627 WP_007909887.1 DUF1780 domain-containing protein -
  LOY41_RS22655 (LOY41_22620) - 5043291..5043818 (+) 528 WP_024014346.1 MOSC domain-containing protein -
  LOY41_RS22660 (LOY41_22625) - 5043870..5044043 (+) 174 WP_007909875.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43995.68 Da        Isoelectric Point: 10.1214

>NTDB_id=627639 LOY41_RS22620 WP_024014342.1 5038664..5039881(+) (pilC) [Pseudomonas atacamensis strain B21-026]
MAVKAAKVSVYAWEGTDRKGSKVSGELSGQNPALIKAQLRKQGINPGKVRKKSASLLSLGKRIKPQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSFATALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
EALKAKIKKAMTYPTAVVLVAAVVTGILLVKVVPQFQSVFSGFGAELPGFTLMIISLSEFMQQWWWAILFALVAAFFGTR
HALKTSQALRDRRDAWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRVRQDVSTGM
QLNFSMRSTGVFPNMAVQMTAIGEESGALDDMLDKVAGFYEAEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=627639 LOY41_RS22620 WP_024014342.1 5038664..5039881(+) (pilC) [Pseudomonas atacamensis strain B21-026]
ATGGCGGTCAAGGCAGCGAAAGTCAGCGTTTACGCCTGGGAAGGCACCGACCGCAAAGGCAGTAAAGTCAGCGGCGAGTT
GAGCGGGCAGAACCCCGCACTGATCAAGGCGCAGCTGCGCAAACAAGGGATCAACCCGGGCAAGGTGCGCAAGAAATCCG
CTTCCCTGCTGAGCTTGGGCAAACGCATCAAACCGCAGGACATCGCCCTGTTCACCCGGCAGATGGCAACGATGATGAAG
GCCGGTGTACCGCTGTTGCAGTCCTTCGACATCATCGGCGAGGGCTTCGAAAACCCGGCCATGCGCAAGCTGGTCGACGA
GGTCAAACAGGAGGTCGCCGCCGGTAACAGCTTCGCCACGGCCCTGCGCAAGAAGCCGCAATACTTCGACGAGTTGTACT
GCAACCTGGTCGACGCCGGCGAACAGTCTGGTGCCCTCGACACTTTGCTCGAACGGGTCGCGACCTATAAGGAAAAAAGC
GAAGCGCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCCACCGCCGTGGTGCTGGTGGCGGCGGTGGTGACCGGCAT
TCTGCTGGTCAAGGTGGTGCCGCAGTTCCAGTCGGTGTTTTCCGGGTTCGGCGCCGAACTGCCGGGCTTCACCCTGATGA
TCATCAGCCTGTCGGAATTCATGCAGCAGTGGTGGTGGGCGATTCTGTTTGCACTGGTGGCAGCGTTTTTCGGCACTCGC
CACGCGTTGAAGACATCGCAGGCCCTGCGCGACCGGCGCGATGCCTGGCTGCTGAAGCTGCCACTGGTGGGCACCTTGAT
GTACAAGTCCGCCGTTGCACGCTTTGCCCGCACCCTGTCGACCACTTTCGCCGCCGGTGTGCCGCTGGTCGAAGCACTGG
ATTCGGTGGCGGGCGCCACCGGCAACGTGGTGTTCAAGCGCGCGGTGCTACGGGTTCGGCAGGACGTCTCGACCGGCATG
CAGCTCAACTTCTCGATGCGCAGCACCGGTGTGTTTCCGAACATGGCGGTGCAGATGACCGCCATCGGCGAGGAGTCCGG
GGCACTGGATGACATGCTCGACAAGGTCGCCGGTTTTTATGAAGCGGAAGTCGATAACATGGTCGACAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTGGGGGTCATCGTCGGTGGTCTGGTGGTGGCCATGTACCTGCCGATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8R166

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.321

100

0.743
  pilC Acinetobacter baylyi ADP1

59.069

100

0.595
  pilC Acinetobacter baumannii D1279779

58.333

100

0.588
  pilC Legionella pneumophila strain ERS1305867

52.75

98.765

0.521
  pilC Vibrio cholerae strain A1552

44.949

97.778

0.44
  pilG Neisseria gonorrhoeae MS11

43.424

99.506

0.432
  pilG Neisseria meningitidis 44/76-A

42.68

99.506

0.425
  pilC Vibrio campbellii strain DS40M4

41.626

100

0.417
  pilC Thermus thermophilus HB27

39.85

98.519

0.393