Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | LOY41_RS22625 | Genome accession | NZ_CP087187 |
| Coordinates | 5039883..5040755 (+) | Length | 290 a.a. |
| NCBI ID | WP_122698545.1 | Uniprot ID | - |
| Organism | Pseudomonas atacamensis strain B21-026 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5034883..5045755
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY41_RS22600 (LOY41_22565) | - | 5035127..5035426 (+) | 300 | WP_039761633.1 | DUF2845 domain-containing protein | - |
| LOY41_RS22605 (LOY41_22570) | - | 5035662..5036015 (-) | 354 | WP_016773155.1 | BON domain-containing protein | - |
| LOY41_RS22610 (LOY41_22575) | pilA/pilAI | 5036312..5036734 (-) | 423 | WP_041477820.1 | pilin | Machinery gene |
| LOY41_RS22615 (LOY41_22580) | pilB | 5036961..5038661 (+) | 1701 | WP_073475466.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LOY41_RS22620 (LOY41_22585) | pilC | 5038664..5039881 (+) | 1218 | WP_024014342.1 | type II secretion system F family protein | Machinery gene |
| LOY41_RS22625 (LOY41_22590) | pilD | 5039883..5040755 (+) | 873 | WP_122698545.1 | A24 family peptidase | Machinery gene |
| LOY41_RS22630 (LOY41_22595) | coaE | 5040752..5041375 (+) | 624 | WP_122706074.1 | dephospho-CoA kinase | - |
| LOY41_RS22635 (LOY41_22600) | yacG | 5041372..5041572 (+) | 201 | WP_016773149.1 | DNA gyrase inhibitor YacG | - |
| LOY41_RS22640 (LOY41_22605) | - | 5041580..5041795 (-) | 216 | WP_016773148.1 | hypothetical protein | - |
| LOY41_RS22645 (LOY41_22610) | - | 5041861..5042550 (-) | 690 | WP_016773147.1 | energy-coupling factor ABC transporter permease | - |
| LOY41_RS22650 (LOY41_22615) | - | 5042668..5043294 (+) | 627 | WP_007909887.1 | DUF1780 domain-containing protein | - |
| LOY41_RS22655 (LOY41_22620) | - | 5043291..5043818 (+) | 528 | WP_024014346.1 | MOSC domain-containing protein | - |
| LOY41_RS22660 (LOY41_22625) | - | 5043870..5044043 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
| LOY41_RS22665 (LOY41_22630) | - | 5044107..5045405 (+) | 1299 | WP_016773144.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31896.12 Da Isoelectric Point: 7.3451
>NTDB_id=627640 LOY41_RS22625 WP_122698545.1 5039883..5040755(+) (pilD) [Pseudomonas atacamensis strain B21-026]
MPIDELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPSETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLCLRGRCSACSAPISKRYPLTELACGLLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
MPIDELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPSETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLCLRGRCSACSAPISKRYPLTELACGLLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=627640 LOY41_RS22625 WP_122698545.1 5039883..5040755(+) (pilD) [Pseudomonas atacamensis strain B21-026]
ATGCCTATCGACGAACTGTTTGCCGTGTATCCGCTGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAATGTTGTGGTCTGGCGCTTGCCGAAAATGCTCGAGCGCGACTGGCGCCAGCAAGCCCATGATGTGCTCGGCC
TGCCCAGCGAAACGCCCGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACATCGGATCCGC
CCTTGGGAAAACATTCCGCTGCTCAGTTATCTGTGCCTGCGCGGGCGCTGCTCGGCTTGTTCGGCGCCGATCAGTAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCCTGCTCTCGGCATTCATTGCCTGGCATCTCGGCTTCGGTTGGCCGGCAGGTC
TGCTGATCTTGCTGACATGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAACTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCATTGTGGGGCGCGGT
GGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACTGGCAAGGACGGCATCGGTCATGGCGATT
TCAAGCTGTTGGCCTTGCTTGGCGCTTGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTGTTGTCATCCTTGGTGGGG
GCGATTTTGGGCGTCGTCATGCTGCGCCTGCGCGCCCAGGAAACCTCGACGCCGATCCCCTTCGGGCCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTTTATTGGCAGTCTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTGTTTGCCGTGTATCCGCTGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAATGTTGTGGTCTGGCGCTTGCCGAAAATGCTCGAGCGCGACTGGCGCCAGCAAGCCCATGATGTGCTCGGCC
TGCCCAGCGAAACGCCCGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACATCGGATCCGC
CCTTGGGAAAACATTCCGCTGCTCAGTTATCTGTGCCTGCGCGGGCGCTGCTCGGCTTGTTCGGCGCCGATCAGTAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCCTGCTCTCGGCATTCATTGCCTGGCATCTCGGCTTCGGTTGGCCGGCAGGTC
TGCTGATCTTGCTGACATGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAACTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCATTGTGGGGCGCGGT
GGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACTGGCAAGGACGGCATCGGTCATGGCGATT
TCAAGCTGTTGGCCTTGCTTGGCGCTTGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTGTTGTCATCCTTGGTGGGG
GCGATTTTGGGCGTCGTCATGCTGCGCCTGCGCGCCCAGGAAACCTCGACGCCGATCCCCTTCGGGCCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTTTATTGGCAGTCTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.225 |
97.931 |
0.531 |
| pilD | Vibrio campbellii strain DS40M4 |
52.632 |
98.276 |
0.517 |
| pilD | Neisseria gonorrhoeae MS11 |
45.645 |
98.966 |
0.452 |
| pilD | Acinetobacter nosocomialis M2 |
47.253 |
94.138 |
0.445 |
| pilD | Acinetobacter baumannii D1279779 |
47.08 |
94.483 |
0.445 |