Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N1H45_RS05955 Genome accession   NZ_CP104206
Coordinates   1232472..1233077 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain hubt-sl     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1227472..1238077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1H45_RS05925 (N1H45_05925) rsmS 1228177..1228338 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  N1H45_RS05930 (N1H45_05930) priC 1228352..1228879 (-) 528 WP_000844849.1 primosomal replication protein N'' -
  N1H45_RS05935 (N1H45_05935) ybaN 1228949..1229326 (+) 378 WP_001188905.1 DUF454 family protein -
  N1H45_RS05940 (N1H45_05940) apt 1229479..1230030 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  N1H45_RS05945 (N1H45_05945) dnaX 1230159..1232090 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  N1H45_RS05950 (N1H45_05950) ybaB 1232143..1232472 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  N1H45_RS05955 (N1H45_05955) recR 1232472..1233077 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  N1H45_RS05960 (N1H45_05960) htpG 1233187..1235061 (+) 1875 WP_000678194.1 molecular chaperone HtpG -
  N1H45_RS05965 (N1H45_05965) adk 1235242..1235886 (+) 645 WP_001220233.1 adenylate kinase -
  N1H45_RS05970 (N1H45_05970) hemH 1236122..1237084 (+) 963 WP_001250096.1 ferrochelatase -
  N1H45_RS05975 (N1H45_05975) aes 1237081..1238040 (-) 960 WP_000801846.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=627609 N1H45_RS05955 WP_001195025.1 1232472..1233077(+) (recR) [Escherichia coli strain hubt-sl]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=627609 N1H45_RS05955 WP_001195025.1 1232472..1233077(+) (recR) [Escherichia coli strain hubt-sl]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443