Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | LOY48_RS22040 | Genome accession | NZ_CP087186 |
| Coordinates | 5010414..5011286 (+) | Length | 290 a.a. |
| NCBI ID | WP_258707211.1 | Uniprot ID | - |
| Organism | Pseudomonas siliginis strain B21-063 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5005414..5016286
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY48_RS22015 (LOY48_21980) | - | 5005659..5005958 (+) | 300 | WP_252878910.1 | DUF2845 domain-containing protein | - |
| LOY48_RS22020 (LOY48_21985) | - | 5006194..5006547 (-) | 354 | WP_071173629.1 | BON domain-containing protein | - |
| LOY48_RS22025 (LOY48_21990) | pilA/pilAI | 5006843..5007265 (-) | 423 | WP_041477820.1 | pilin | Machinery gene |
| LOY48_RS22030 (LOY48_21995) | pilB | 5007492..5009192 (+) | 1701 | WP_056790439.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LOY48_RS22035 (LOY48_22000) | pilC | 5009195..5010412 (+) | 1218 | WP_252884847.1 | type II secretion system F family protein | Machinery gene |
| LOY48_RS22040 (LOY48_22005) | pilD | 5010414..5011286 (+) | 873 | WP_258707211.1 | A24 family peptidase | Machinery gene |
| LOY48_RS22045 (LOY48_22010) | coaE | 5011283..5011906 (+) | 624 | WP_258707212.1 | dephospho-CoA kinase | - |
| LOY48_RS22050 (LOY48_22015) | yacG | 5011903..5012103 (+) | 201 | WP_016773149.1 | DNA gyrase inhibitor YacG | - |
| LOY48_RS22055 (LOY48_22020) | - | 5012111..5012326 (-) | 216 | WP_016773148.1 | hypothetical protein | - |
| LOY48_RS22060 (LOY48_22025) | - | 5012392..5013081 (-) | 690 | WP_041477814.1 | energy-coupling factor ABC transporter permease | - |
| LOY48_RS22065 (LOY48_22030) | - | 5013272..5013898 (+) | 627 | WP_007909887.1 | DUF1780 domain-containing protein | - |
| LOY48_RS22070 (LOY48_22035) | - | 5013895..5014422 (+) | 528 | WP_160768590.1 | MOSC domain-containing protein | - |
| LOY48_RS22075 (LOY48_22040) | - | 5014474..5014647 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
| LOY48_RS22080 (LOY48_22045) | - | 5014711..5016009 (+) | 1299 | WP_252873381.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31920.17 Da Isoelectric Point: 7.3655
>NTDB_id=627610 LOY48_RS22040 WP_258707211.1 5010414..5011286(+) (pilD) [Pseudomonas siliginis strain B21-063]
MPIEELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPTETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLLLRGRCSACSAPISKRYPLTELACGVLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
MPIEELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPTETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLLLRGRCSACSAPISKRYPLTELACGVLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=627610 LOY48_RS22040 WP_258707211.1 5010414..5011286(+) (pilD) [Pseudomonas siliginis strain B21-063]
ATGCCTATCGAAGAACTGTTTGCTGTGTATCCGCTGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAATGTTGTGGTCTGGCGCTTGCCGAAAATGCTCGAGCGCGACTGGCGCCAGCAGGCCCATGATGTGCTCGGCC
TGCCTACTGAAACGCCTGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCTTGGGAAAACATTCCGCTGCTCAGTTATCTGCTGCTGCGCGGGCGCTGCTCGGCCTGCTCGGCGCCGATCAGCAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCGTCCTCTCGGCATTCATTGCCTGGCATCTCGGCTTCGGTTGGCCGGCAGGTC
TGCTGATCTTGCTGACATGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAACTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCGTTGTGGGGCGCGGT
CGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGTATAGGCCATGGCGATT
TCAAGCTGTTGGCCTTGCTCGGCGCATGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTTCTATCTTCCCTGGTGGGG
GCGATTTTGGGCGTTGTCATGCTGCGTCTGCGCGCCCAGGAAACCTCGACGCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
ATGCCTATCGAAGAACTGTTTGCTGTGTATCCGCTGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAATGTTGTGGTCTGGCGCTTGCCGAAAATGCTCGAGCGCGACTGGCGCCAGCAGGCCCATGATGTGCTCGGCC
TGCCTACTGAAACGCCTGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCTTGGGAAAACATTCCGCTGCTCAGTTATCTGCTGCTGCGCGGGCGCTGCTCGGCCTGCTCGGCGCCGATCAGCAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCGTCCTCTCGGCATTCATTGCCTGGCATCTCGGCTTCGGTTGGCCGGCAGGTC
TGCTGATCTTGCTGACATGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAACTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCGTTGTGGGGCGCGGT
CGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGTATAGGCCATGGCGATT
TCAAGCTGTTGGCCTTGCTCGGCGCATGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTTCTATCTTCCCTGGTGGGG
GCGATTTTGGGCGTTGTCATGCTGCGTCTGCGCGCCCAGGAAACCTCGACGCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.873 |
97.931 |
0.528 |
| pilD | Vibrio campbellii strain DS40M4 |
52.982 |
98.276 |
0.521 |
| pilD | Neisseria gonorrhoeae MS11 |
46.69 |
98.966 |
0.462 |
| pilD | Acinetobacter baumannii D1279779 |
46.127 |
97.931 |
0.452 |
| pilD | Acinetobacter nosocomialis M2 |
46.127 |
97.931 |
0.452 |