Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LOY55_RS26045 Genome accession   NZ_CP087176
Coordinates   5696340..5697557 (+) Length   405 a.a.
NCBI ID   WP_223522736.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-040     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5691340..5702557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY55_RS26025 (LOY55_25985) - 5692791..5693051 (+) 261 WP_109786361.1 DUF2845 domain-containing protein -
  LOY55_RS26030 (LOY55_25990) - 5693327..5693680 (-) 354 WP_077431250.1 BON domain-containing protein -
  LOY55_RS26035 (LOY55_25995) - 5693989..5694411 (-) 423 WP_109786282.1 pilin -
  LOY55_RS26040 (LOY55_26000) pilB 5694637..5696337 (+) 1701 WP_223522737.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LOY55_RS26045 (LOY55_26005) pilC 5696340..5697557 (+) 1218 WP_223522736.1 type II secretion system F family protein Machinery gene
  LOY55_RS26050 (LOY55_26010) pilD 5697559..5698431 (+) 873 WP_223522735.1 A24 family peptidase Machinery gene
  LOY55_RS26055 (LOY55_26015) coaE 5698428..5699051 (+) 624 WP_046028514.1 dephospho-CoA kinase -
  LOY55_RS26060 (LOY55_26020) yacG 5699048..5699248 (+) 201 WP_046028515.1 DNA gyrase inhibitor YacG -
  LOY55_RS26065 (LOY55_26025) - 5699252..5699467 (-) 216 WP_046028516.1 hypothetical protein -
  LOY55_RS26070 (LOY55_26030) - 5699531..5700220 (-) 690 WP_077431246.1 energy-coupling factor ABC transporter permease -
  LOY55_RS26075 (LOY55_26035) - 5700217..5700690 (-) 474 WP_077432188.1 FAD/FMN-containing dehydrogenase -
  LOY55_RS26080 (LOY55_26040) - 5700820..5701446 (+) 627 WP_109786285.1 DUF1780 domain-containing protein -
  LOY55_RS26085 (LOY55_26045) - 5701443..5701970 (+) 528 WP_046028520.1 MOSC domain-containing protein -
  LOY55_RS26090 (LOY55_26050) - 5702021..5702194 (+) 174 WP_032830895.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44267.05 Da        Isoelectric Point: 10.0125

>NTDB_id=627360 LOY55_RS26045 WP_223522736.1 5696340..5697557(+) (pilC) [Pseudomonas sp. B21-040]
MAVKAAKISVYAWEGTDRKGTRMTGELSGQNPALIKAQLRKQGINPGKIRKKSASIFSVGKRIKTQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRKLVDEVKQEVAAGNSFAASLRKKPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAMTYPLAVVFVAIIVTGILLVKVVPQFESVFKGFGAELPAFTVMVIGLSAFMQQWWWALLGGLIAGIFGVR
HAFRKSPGFRDWTDTWLLKLPLIGTLMYKSAVARYARTLSTTFAAGVPLVEALESVAGATGNIVFKRAVLRIRQDVSTGM
QLNFSMRTSGIFPNMAIQMTAIGEESGALDDMLDKVASFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=627360 LOY55_RS26045 WP_223522736.1 5696340..5697557(+) (pilC) [Pseudomonas sp. B21-040]
ATGGCGGTCAAAGCAGCAAAAATCAGCGTCTATGCCTGGGAAGGCACAGACCGCAAAGGCACCCGAATGACAGGCGAGTT
GAGCGGCCAGAACCCGGCGTTGATCAAGGCCCAACTGCGCAAGCAAGGCATCAATCCCGGCAAGATACGCAAGAAATCCG
CCTCGATTTTCAGCGTCGGCAAACGCATCAAGACCCAGGATATTGCCCTGTTCACCCGGCAGATGGCGACCATGATGAAA
GCGGGCGTGCCGCTGCTGCAGTCATTCGACATTATCGGCGAAGGCTTCGATAACCCGGCCATGCGCAAACTGGTGGACGA
GGTGAAACAGGAAGTCGCGGCCGGTAACAGCTTCGCCGCGTCCCTGCGCAAGAAGCCGCAGTATTTCGATGAGCTCTACT
GCAACCTGGTGGACGCCGGCGAGCAGGCTGGCGCTCTCGATACCCTGTTGGAACGGGTGGCCACCTACAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCGCTCGCGGTGGTGTTTGTCGCGATCATTGTCACGGGGAT
TCTGCTGGTCAAGGTGGTGCCCCAGTTCGAGTCGGTGTTCAAAGGGTTTGGCGCTGAACTGCCGGCGTTCACCGTGATGG
TCATCGGCCTTTCGGCGTTCATGCAGCAGTGGTGGTGGGCGCTGCTCGGCGGGTTGATCGCGGGCATTTTCGGTGTGCGC
CACGCTTTCAGGAAGTCCCCCGGGTTTCGCGACTGGACGGACACCTGGCTGTTGAAGCTGCCGCTGATTGGCACGCTGAT
GTACAAATCTGCCGTGGCCCGTTACGCCCGTACGCTGTCGACCACCTTTGCCGCAGGTGTCCCGCTGGTCGAAGCGCTGG
AGTCCGTGGCCGGCGCCACTGGCAACATTGTGTTCAAGCGTGCGGTGCTGCGGATCAGGCAGGACGTGTCGACCGGCATG
CAGTTGAACTTCTCCATGCGCACCTCGGGCATCTTCCCCAACATGGCGATTCAGATGACAGCGATTGGCGAAGAGTCCGG
CGCACTGGATGACATGCTCGACAAAGTCGCGAGTTTCTATGAGGACGAAGTGGACAACATGGTCGATAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTCGTGCTCGGTGTTATCGTCGGAGGCCTGGTGGTTGCAATGTACCTGCCCATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.086

100

0.731
  pilC Acinetobacter baylyi ADP1

59.559

100

0.6
  pilC Acinetobacter baumannii D1279779

59.069

100

0.595
  pilC Legionella pneumophila strain ERS1305867

53.788

97.778

0.526
  pilG Neisseria gonorrhoeae MS11

42.432

99.506

0.422
  pilG Neisseria meningitidis 44/76-A

41.935

99.506

0.417
  pilC Vibrio cholerae strain A1552

42.424

97.778

0.415
  pilC Vibrio campbellii strain DS40M4

40.64

100

0.407
  pilC Thermus thermophilus HB27

37.406

99.012

0.37