Detailed information NTG0627361

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LOY55_RS26050
• Genome accession: NZ_CP087176
• Coordinates: 5697559..5698431 (+)
• Length: 290 a.a.
• NCBI ID: WP_223522735.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-040
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5692559..5703431

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY55_RS26025 (LOY55_25985)	-	5692791..5693051 (+)	261	WP_109786361.1	DUF2845 domain-containing protein	-
LOY55_RS26030 (LOY55_25990)	-	5693327..5693680 (-)	354	WP_077431250.1	BON domain-containing protein	-
LOY55_RS26035 (LOY55_25995)	-	5693989..5694411 (-)	423	WP_109786282.1	pilin	-
LOY55_RS26040 (LOY55_26000)	pilB	5694637..5696337 (+)	1701	WP_223522737.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LOY55_RS26045 (LOY55_26005)	pilC	5696340..5697557 (+)	1218	WP_223522736.1	type II secretion system F family protein	Machinery gene
LOY55_RS26050 (LOY55_26010)	pilD	5697559..5698431 (+)	873	WP_223522735.1	A24 family peptidase	Machinery gene
LOY55_RS26055 (LOY55_26015)	coaE	5698428..5699051 (+)	624	WP_046028514.1	dephospho-CoA kinase	-
LOY55_RS26060 (LOY55_26020)	yacG	5699048..5699248 (+)	201	WP_046028515.1	DNA gyrase inhibitor YacG	-
LOY55_RS26065 (LOY55_26025)	-	5699252..5699467 (-)	216	WP_046028516.1	hypothetical protein	-
LOY55_RS26070 (LOY55_26030)	-	5699531..5700220 (-)	690	WP_077431246.1	energy-coupling factor ABC transporter permease	-
LOY55_RS26075 (LOY55_26035)	-	5700217..5700690 (-)	474	WP_077432188.1	FAD/FMN-containing dehydrogenase	-
LOY55_RS26080 (LOY55_26040)	-	5700820..5701446 (+)	627	WP_109786285.1	DUF1780 domain-containing protein	-
LOY55_RS26085 (LOY55_26045)	-	5701443..5701970 (+)	528	WP_046028520.1	MOSC domain-containing protein	-
LOY55_RS26090 (LOY55_26050)	-	5702021..5702194 (+)	174	WP_032830895.1	DUF3094 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32172.28 Da
• Isoelectric Point: 8.0727

>NTDB_id=627361 LOY55_RS26050 WP_223522735.1 5697559..5698431(+) (pilD) [Pseudomonas sp. B21-040]
MPLNEILTVYPLAFVAIALVVGLLVGSFLNVVVWRLPKMLNREWRLQAHDVLGVPAEAPGPPYNLMLPHSHCPHCDHRIR
PWENVPVLSYLFLRGRCSNCSAPISKRYPLTELACSLLSAFIAWHFGFGWQAGTVLVLSWGLLAMSLIDAEHQLLPDVLV
LPLLWLGLIVNSFGVFVSLHEALWGAVAGYMVLWTVYWLFKLLTGKDGIGHGDFKLLAMLGAWGGWQILPLTILLSSLAG
VFVGVILLRLRNANTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=627361 LOY55_RS26050 WP_223522735.1 5697559..5698431(+) (pilD) [Pseudomonas sp. B21-040]
ATGCCCTTGAATGAAATCCTGACTGTTTATCCGCTGGCGTTCGTGGCCATTGCACTGGTTGTAGGTCTGCTGGTGGGCAG
TTTCCTCAATGTGGTGGTCTGGCGCCTGCCGAAAATGCTCAACCGCGAATGGCGGTTGCAGGCCCATGACGTGCTCGGTG
TCCCCGCCGAAGCACCAGGCCCGCCCTACAATTTGATGCTGCCCCATTCCCATTGCCCGCATTGCGACCATCGAATTCGC
CCATGGGAAAACGTTCCGGTGCTCAGTTACCTGTTTTTAAGGGGGCGGTGTTCAAACTGCAGCGCACCGATCAGCAAGCG
CTACCCGCTGACTGAACTGGCCTGCAGCCTGCTCTCGGCGTTTATCGCCTGGCATTTCGGTTTCGGTTGGCAGGCCGGCA
CGGTACTGGTCCTGAGTTGGGGATTGCTGGCGATGAGCCTGATCGACGCCGAGCACCAATTGCTGCCGGACGTGTTGGTG
CTGCCGCTGTTGTGGCTCGGGTTGATCGTCAACAGCTTCGGGGTTTTCGTGTCATTGCATGAAGCCCTGTGGGGAGCAGT
GGCCGGGTACATGGTGTTGTGGACGGTGTACTGGCTGTTCAAGCTGCTCACCGGCAAAGACGGGATTGGCCACGGTGATT
TCAAGTTGCTGGCCATGCTGGGGGCCTGGGGCGGCTGGCAGATTTTGCCTCTGACGATTCTGCTGTCATCGCTCGCGGGG
GTATTCGTCGGCGTGATTTTGCTGCGCTTGCGCAATGCGAATACATCGACGCCGATCCCCTTCGGCCCCTATCTGGCGAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.521	97.931	0.524
pilD	Vibrio campbellii strain DS40M4	51.064	97.241	0.497
pilD	Acinetobacter baumannii D1279779	49.451	94.138	0.466
pilD	Acinetobacter nosocomialis M2	48.718	94.138	0.459
pilD	Neisseria gonorrhoeae MS11	46.667	93.103	0.434