Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VIBNI_RS18280 Genome accession   NC_022528
Coordinates   4047933..4049036 (-) Length   367 a.a.
NCBI ID   WP_022552144.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4042933..4054036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBNI_RS18250 (VIBNI_A3828) hemF 4043524..4044441 (-) 918 WP_022552141.1 oxygen-dependent coproporphyrinogen oxidase -
  VIBNI_RS18255 (VIBNI_A3829) - 4044464..4045021 (-) 558 WP_004406472.1 L-threonylcarbamoyladenylate synthase -
  VIBNI_RS18260 (VIBNI_A3830) purE 4045213..4045698 (+) 486 WP_004406473.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VIBNI_RS18265 (VIBNI_A3831) - 4045704..4046831 (+) 1128 WP_022552142.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VIBNI_RS18270 (VIBNI_A3832) - 4046876..4047445 (-) 570 WP_022552143.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  VIBNI_RS18275 (VIBNI_A3833) - 4047457..4047930 (-) 474 WP_004406478.1 DUF494 family protein -
  VIBNI_RS18280 (VIBNI_A3834) dprA 4047933..4049036 (-) 1104 WP_022552144.1 DNA-processing protein DprA Machinery gene
  VIBNI_RS18285 (VIBNI_A3835) - 4049038..4050132 (-) 1095 WP_022597304.1 LysM peptidoglycan-binding domain-containing protein -
  VIBNI_RS18290 (VIBNI_A3836) def 4050250..4050771 (+) 522 WP_004406486.1 peptide deformylase -
  VIBNI_RS18295 (VIBNI_A3837) fmt 4050804..4051751 (+) 948 WP_022552146.1 methionyl-tRNA formyltransferase -
  VIBNI_RS18300 (VIBNI_A3838) rsmB 4051838..4053118 (+) 1281 WP_022552147.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39404.76 Da        Isoelectric Point: 5.4038

>NTDB_id=62593 VIBNI_RS18280 WP_022552144.1 4047933..4049036(-) (dprA) [Vibrio nigripulchritudo]
MTNNELRAWLTLSFTPQLGGQSLTRLLAIDSPVNILSSGPERWQAIGLKPKQIAYLQAQSHPEVEESLEWEAASDSHHIL
TLLDTDYPALLKEVPSPPTTLFVKGDVSSLSAPQIAMVGSRNASIEGLQTAKAFAKDLSCNGLVVTSGLALGVDGYAHDG
ALEGGGKTVAVLGSGLECIYPARHRKLAARVVDQGALVSEFRPNTKPRPEHFPRRNRIISGLSVGVFVVEAAERSGSLIT
ARYAAEQGRDVFALPGSIHNPNARGGNALIKSGACLVQSSQDILQEVENLVSWSFSQQTSIFSEEAEQEELPFPELMANV
GIEATPVDILAERTHIPVHEVMMQLLELELSGHIVAVPGGYIRKGRG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=62593 VIBNI_RS18280 WP_022552144.1 4047933..4049036(-) (dprA) [Vibrio nigripulchritudo]
ATGACGAACAATGAGTTACGAGCCTGGCTGACCTTAAGTTTCACCCCACAATTAGGCGGCCAGTCGTTGACTCGATTGCT
CGCTATTGATTCTCCCGTCAACATACTGTCTTCCGGTCCAGAGCGCTGGCAAGCCATTGGTCTTAAACCAAAACAGATCG
CTTATCTACAAGCTCAATCCCACCCAGAAGTAGAAGAGAGCCTTGAGTGGGAGGCGGCTTCTGATTCCCATCATATTCTG
ACTCTGCTGGATACTGATTATCCGGCTCTGTTGAAAGAAGTCCCTTCACCGCCTACCACACTCTTTGTGAAAGGTGACGT
GTCGTCTTTGAGTGCACCGCAAATCGCAATGGTGGGTAGCCGAAATGCCAGTATTGAAGGGCTGCAAACCGCAAAAGCCT
TCGCTAAAGACCTATCATGTAATGGGCTGGTTGTGACCAGCGGTCTGGCTTTGGGCGTAGATGGGTACGCTCATGATGGA
GCACTGGAAGGAGGTGGAAAAACGGTTGCCGTATTGGGCTCCGGGTTGGAGTGTATTTACCCGGCTAGGCATCGCAAGCT
TGCTGCCAGAGTTGTCGATCAAGGGGCTCTGGTGTCAGAGTTTCGCCCGAACACCAAACCTCGTCCTGAACATTTTCCCC
GTCGTAACCGAATCATCAGTGGATTATCAGTAGGCGTATTTGTCGTAGAAGCGGCAGAGCGCAGTGGCTCACTCATTACT
GCCCGCTATGCCGCAGAGCAGGGGCGCGATGTTTTTGCCTTACCGGGCTCAATTCATAACCCCAATGCCCGAGGTGGTAA
TGCGTTGATCAAGTCAGGTGCCTGCTTGGTTCAGTCCTCCCAAGATATCCTCCAGGAAGTGGAAAATTTAGTTTCTTGGT
CGTTTTCTCAACAAACATCTATATTTAGTGAAGAAGCCGAGCAAGAAGAATTGCCATTTCCCGAACTAATGGCTAACGTA
GGAATAGAAGCAACACCCGTTGATATTCTTGCAGAGCGGACCCATATACCTGTGCATGAAGTCATGATGCAACTACTGGA
ACTTGAGCTTTCAGGGCATATTGTTGCAGTACCTGGTGGCTATATTCGAAAGGGGAGGGGCTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(315-360)

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

65.014

98.91

0.643
  dprA Vibrio cholerae strain A1552

59.299

100

0.599
  dprA Glaesserella parasuis strain SC1401

45.553

100

0.46
  dprA Neisseria meningitidis strain C311

38.5

100

0.42
  dprA Neisseria meningitidis MC58

38.5

100

0.42
  dprA Neisseria gonorrhoeae strain FA1090

37.94

100

0.411
  dprA Legionella pneumophila strain ERS1305867

50

81.744

0.409
  dprA Neisseria gonorrhoeae MS11

37.437

100

0.406
  dprA Haemophilus influenzae Rd KW20

42.733

93.733

0.401
  dprA Acinetobacter baylyi ADP1

39.181

93.188

0.365

Multiple sequence alignment