Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KT882_RS07275 Genome accession   NZ_CP086370
Coordinates   1647219..1648442 (-) Length   407 a.a.
NCBI ID   WP_161072602.1    Uniprot ID   -
Organism   Pseudoduganella aquatica strain HC52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1642219..1653442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KT882_RS07255 pilD 1642430..1643299 (-) 870 WP_161072605.1 A24 family peptidase Machinery gene
  KT882_RS07260 - 1643352..1644770 (-) 1419 WP_228895111.1 sigma-54-dependent Fis family transcriptional regulator -
  KT882_RS07265 - 1645026..1646417 (+) 1392 WP_161072604.1 GntP family permease -
  KT882_RS07270 - 1646428..1647207 (+) 780 WP_161072603.1 3-hydroxybutyrate dehydrogenase -
  KT882_RS07275 pilC 1647219..1648442 (-) 1224 WP_161072602.1 type II secretion system F family protein Machinery gene
  KT882_RS07280 pilF 1648453..1650183 (-) 1731 WP_161072601.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KT882_RS07285 - 1650309..1651583 (-) 1275 WP_161072600.1 HlyC/CorC family transporter -
  KT882_RS07290 - 1651753..1652985 (+) 1233 WP_228895112.1 right-handed parallel beta-helix repeat-containing protein -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44278.20 Da        Isoelectric Point: 9.8545

>NTDB_id=624560 KT882_RS07275 WP_161072602.1 1647219..1648442(-) (pilC) [Pseudoduganella aquatica strain HC52]
MATTSTPGSPVKESVFAWEGKDKTGKTVRGELRAGGEAVVNVTLRRQGIMVTKVKKKVYRSGKKVTEKDISLFTRQLATM
MKAGVPLLQSFDIVGKGHANPSVAKLVMDLRADIETGTSLNQAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAIYKE
KTLAMKGKIKSALTYPVSILGVAFIVTAVIMIWVVPAFKQVFASFGADLPAPTLAVMAISEFFVSYWYLIFGGLFGSLYF
FFQAWKRSPQVQRFMDVTLLKLPIFGEVIRKATIARWTRTLATMFAAGVPLVESLDSVGGASGNIVYLEATRRIQKEVST
GTSLTVAMQNADVFPNMVTQMVSIGEESGSLDAMLGKVADFFEDEVDEAVASLSSLMEPLIMVILGVLIGGLVIAMYLPI
FKLGSVV

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=624560 KT882_RS07275 WP_161072602.1 1647219..1648442(-) (pilC) [Pseudoduganella aquatica strain HC52]
ATGGCCACAACCAGCACCCCGGGCAGCCCGGTCAAGGAATCGGTCTTCGCCTGGGAAGGCAAGGACAAAACCGGCAAGAC
CGTGCGCGGCGAGCTGCGTGCCGGCGGCGAGGCCGTGGTCAACGTGACCTTGCGGCGCCAGGGCATCATGGTGACCAAGG
TCAAGAAGAAGGTCTACCGCAGCGGCAAGAAGGTCACCGAGAAAGACATTTCCCTGTTCACGCGGCAGCTGGCCACCATG
ATGAAGGCCGGCGTGCCGCTGCTGCAGTCCTTCGACATCGTCGGCAAAGGCCACGCCAACCCGTCGGTGGCCAAGCTGGT
GATGGACCTGCGCGCCGACATCGAGACCGGCACCAGCCTGAACCAGGCCTTCCGCAAGTTCCCGCTGTATTTCGACCCGC
TGTTCTGCAACCTGGTGGGCGCCGGCGAACAGGCCGGCATCCTGGAAGACCTGCTGACGCGGCTGGCGATCTACAAGGAA
AAGACGCTGGCCATGAAGGGCAAGATCAAGTCCGCCCTGACCTACCCGGTGTCCATCCTGGGCGTGGCCTTCATCGTCAC
GGCCGTCATCATGATCTGGGTGGTGCCGGCGTTCAAGCAGGTGTTCGCCAGCTTCGGCGCCGACCTGCCCGCGCCCACGC
TGGCGGTGATGGCCATCTCCGAATTCTTCGTGTCCTACTGGTATCTGATCTTCGGTGGCCTGTTCGGCTCGCTGTATTTC
TTCTTCCAGGCCTGGAAGCGCTCGCCGCAGGTGCAGCGCTTTATGGACGTGACCCTGCTCAAGCTGCCCATCTTCGGCGA
GGTGATACGCAAGGCCACCATCGCGCGCTGGACGCGCACGCTGGCCACCATGTTCGCCGCCGGCGTGCCGCTGGTGGAGT
CGCTCGACTCGGTGGGCGGCGCGTCGGGCAACATCGTCTACCTTGAAGCGACGCGCCGCATCCAGAAGGAAGTGAGCACC
GGCACCAGCCTGACGGTGGCCATGCAGAACGCCGACGTGTTCCCGAATATGGTGACGCAGATGGTCTCCATCGGCGAGGA
ATCCGGCTCGCTGGACGCCATGCTGGGCAAGGTGGCCGACTTCTTCGAGGACGAAGTGGACGAGGCCGTGGCCTCGCTGT
CGAGCCTGATGGAGCCGCTCATCATGGTCATCCTGGGCGTGCTGATCGGCGGCCTGGTGATTGCCATGTACCTGCCCATC
TTCAAGCTTGGGTCGGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.25

98.28

0.533
  pilC Legionella pneumophila strain ERS1305867

53.283

97.297

0.518
  pilG Neisseria gonorrhoeae MS11

52.897

97.543

0.516
  pilG Neisseria meningitidis 44/76-A

52.645

97.543

0.514
  pilC Acinetobacter baylyi ADP1

50.243

100

0.509
  pilC Acinetobacter baumannii D1279779

51.889

97.543

0.506
  pilC Vibrio cholerae strain A1552

39.312

100

0.393
  pilC Vibrio campbellii strain DS40M4

39.547

97.543

0.386
  pilC Thermus thermophilus HB27

37.093

98.034

0.364