NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	KT882_RS07255	Genome accession	NZ_CP086370
Coordinates	1642430..1643299 (-)	Length	289 a.a.
NCBI ID	WP_161072605.1	Uniprot ID	A0A7X4HC82
Organism	Pseudoduganella aquatica strain HC52
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1637430..1648299

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KT882_RS07225	argJ	1638192..1639430 (+)	1239	WP_161072611.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
KT882_RS07230	-	1639432..1640313 (+)	882	WP_228895106.1	ATP-binding protein	-
KT882_RS07235	mutT	1640314..1640727 (+)	414	WP_161072609.1	8-oxo-dGTP diphosphatase MutT	-
KT882_RS07240	yacG	1640782..1640952 (-)	171	WP_228895108.1	DNA gyrase inhibitor YacG	-
KT882_RS07245	zapD	1640962..1641717 (-)	756	WP_228895110.1	cell division protein ZapD	-
KT882_RS07250	coaE	1641782..1642423 (-)	642	WP_161072606.1	dephospho-CoA kinase	-
KT882_RS07255	pilD	1642430..1643299 (-)	870	WP_161072605.1	A24 family peptidase	Machinery gene
KT882_RS07260	-	1643352..1644770 (-)	1419	WP_228895111.1	sigma-54-dependent Fis family transcriptional regulator	-
KT882_RS07265	-	1645026..1646417 (+)	1392	WP_161072604.1	GntP family permease	-
KT882_RS07270	-	1646428..1647207 (+)	780	WP_161072603.1	3-hydroxybutyrate dehydrogenase	-

Sequence

Protein

Download Length: 289 a.a. Molecular weight: 30888.67 Da Isoelectric Point: 7.3199

                                >NTDB_id=624559 KT882_RS07255 WP_161072605.1 1642430..1643299(-) (pilD) [Pseudoduganella aquatica strain HC52]

MQDILLFAPPATLIAAIAAGIFGLLIGSFLNVVIHRVPIMMQRESDNYVASEMGKELPHTERYNLVVPRSACPHCKHQIT

ALENIPVASYLVLGGKCSNCKAPISPRYPIIEALTGLLSAALVWQFGSGWMGLATLLFAYMLIAMTFIDADTQLLPDDLT

LPLLWAGLLININGTFVPLQDAVIGAAAGYLALWSIYWLFKLATGKEGMGYGDFKLLGALGAWLGWATLPTIILLSSVVG

AVVGISLMVFAKRGRNNPIPFGPYLAVAGLITLMYGGPLAAFTSSVLGH

Nucleotide

Download Length: 870 bp

                                >NTDB_id=624559 KT882_RS07255 WP_161072605.1 1642430..1643299(-) (pilD) [Pseudoduganella aquatica strain HC52]

ATGCAGGATATCTTGCTGTTTGCCCCGCCCGCCACCCTGATCGCCGCCATCGCGGCCGGCATCTTCGGCCTGCTGATCGG

CAGCTTCCTGAACGTCGTTATCCACCGCGTGCCCATCATGATGCAACGCGAGTCGGACAACTACGTGGCGTCCGAAATGG

GCAAGGAACTGCCGCACACCGAACGCTACAACCTGGTGGTGCCGCGCTCGGCCTGCCCGCACTGCAAGCACCAGATCACC

GCGCTGGAAAACATCCCCGTCGCCAGCTACCTGGTGCTGGGCGGGAAATGCAGCAACTGCAAGGCGCCGATCTCGCCGCG

CTACCCCATTATCGAAGCGCTGACCGGTCTGCTGTCGGCAGCCCTGGTGTGGCAGTTTGGCAGCGGCTGGATGGGCCTGG

CCACCCTGCTGTTCGCCTACATGCTGATCGCCATGACCTTTATCGACGCCGACACCCAGCTGCTGCCGGACGACCTGACC

CTGCCGCTGCTGTGGGCCGGCCTGCTGATCAACATCAACGGCACCTTCGTGCCGCTGCAGGACGCCGTGATAGGAGCGGC

GGCCGGCTACCTGGCGCTGTGGTCCATCTACTGGCTGTTCAAGCTGGCCACCGGCAAGGAAGGCATGGGCTACGGCGACT

TCAAACTGCTGGGCGCGCTGGGTGCCTGGCTGGGCTGGGCGACGCTGCCGACCATTATCCTGCTGTCGTCCGTGGTGGGC

GCGGTGGTGGGCATCAGCCTGATGGTGTTCGCCAAGCGCGGCCGCAACAACCCCATTCCCTTCGGTCCCTACCTGGCGGT

GGCCGGCCTGATCACGCTGATGTACGGCGGCCCGCTGGCGGCCTTCACCTCCAGCGTGCTGGGCCATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(137-245)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7X4HC82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio campbellii strain DS40M4	53.986	95.502	0.516
pilD	Vibrio cholerae strain A1552	56.274	91.003	0.512
pilD	Neisseria gonorrhoeae MS11	49.817	94.464	0.471
pilD	Acinetobacter baumannii D1279779	48.561	96.194	0.467
pilD	Acinetobacter nosocomialis M2	47.842	96.194	0.46

Detailed information NTG0624559