Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LLZ83_RS01175 Genome accession   NZ_CP086130
Coordinates   199123..199518 (+) Length   131 a.a.
NCBI ID   WP_000282450.1    Uniprot ID   A0AAW6XW90
Organism   Streptococcus agalactiae strain MIN-180     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 194123..204518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLZ83_RS01140 (LLZ83_01140) proC 194517..195287 (-) 771 WP_001867096.1 pyrroline-5-carboxylate reductase -
  LLZ83_RS01145 (LLZ83_01145) pepA 195357..196424 (-) 1068 WP_001281321.1 glutamyl aminopeptidase -
  LLZ83_RS01150 (LLZ83_01150) - 196609..196848 (-) 240 WP_000660181.1 hypothetical protein -
  LLZ83_RS01155 (LLZ83_01155) - 197009..197293 (+) 285 WP_000791272.1 DUF4651 domain-containing protein -
  LLZ83_RS01160 (LLZ83_01160) - 197290..197613 (+) 324 WP_000601792.1 thioredoxin family protein -
  LLZ83_RS01165 (LLZ83_01165) ytpR 197646..198272 (+) 627 WP_000578331.1 YtpR family tRNA-binding protein -
  LLZ83_RS01170 (LLZ83_01170) - 198326..199042 (-) 717 WP_000186183.1 class I SAM-dependent methyltransferase -
  LLZ83_RS01175 (LLZ83_01175) ssbA 199123..199518 (+) 396 WP_000282450.1 single-stranded DNA-binding protein Machinery gene
  LLZ83_RS01180 (LLZ83_01180) - 199641..200285 (+) 645 WP_000416612.1 HAD family phosphatase -
  LLZ83_RS01185 (LLZ83_01185) - 200312..202057 (+) 1746 WP_000930334.1 LytS/YhcK type 5TM receptor domain-containing protein -
  LLZ83_RS01190 (LLZ83_01190) - 202038..202778 (+) 741 WP_000697630.1 LytTR family DNA-binding domain-containing protein -
  LLZ83_RS01195 (LLZ83_01195) - 202948..203403 (+) 456 WP_000683316.1 CidA/LrgA family protein -
  LLZ83_RS01200 (LLZ83_01200) lrgB 203405..204133 (+) 729 WP_000421727.1 antiholin-like protein LrgB -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14790.80 Da        Isoelectric Point: 7.0189

>NTDB_id=622799 LLZ83_RS01175 WP_000282450.1 199123..199518(+) (ssbA) [Streptococcus agalactiae strain MIN-180]
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISVDGELRTR
KYEKDGQTHYITEVLASSFQLLESRSQRAMRENNISGDLSDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=622799 LLZ83_RS01175 WP_000282450.1 199123..199518(+) (ssbA) [Streptococcus agalactiae strain MIN-180]
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTAAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAGTAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTTCCCA
ACGTGCTATGCGTGAAAATAACATTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

80.153

100

0.802
  ssbB/cilA Streptococcus pneumoniae R6

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae Rx1

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae D39

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae TIGR4

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbB/cilA Streptococcus mitis NCTC 12261

76.336

100

0.763
  ssbB/cilA Streptococcus mitis SK321

76.336

100

0.763
  ssbB Lactococcus lactis subsp. cremoris KW2

59.649

87.023

0.519
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.402

81.679

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405