Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LL045_RS02000 Genome accession   NZ_CP086083
Coordinates   403667..404056 (+) Length   129 a.a.
NCBI ID   WP_038599186.1    Uniprot ID   A0AAP8E400
Organism   Lactococcus lactis subsp. lactis strain EIP20A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 403667..410151 403667..404056 within 0


Gene organization within MGE regions


Location: 403667..410151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL045_RS02000 (LL045_02000) ssbB 403667..404056 (+) 390 WP_038599186.1 single-stranded DNA-binding protein Machinery gene
  LL045_RS02005 (LL045_02005) groES 404176..404460 (+) 285 WP_003131589.1 co-chaperone GroES -
  LL045_RS02010 (LL045_02010) groL 404547..406175 (+) 1629 WP_153241698.1 chaperonin GroEL -
  LL045_RS02015 (LL045_02015) - 406219..407031 (-) 813 WP_038599190.1 MBL fold metallo-hydrolase -
  LL045_RS02020 (LL045_02020) - 407202..408644 (-) 1443 WP_394530309.1 ATP-binding protein -
  LL045_RS02025 (LL045_02025) yycF 408637..409338 (-) 702 WP_038599193.1 response regulator YycF -
  LL045_RS02030 (LL045_02030) tmk 409516..410151 (+) 636 WP_058206001.1 dTMP kinase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14702.82 Da        Isoelectric Point: 8.3705

>NTDB_id=622369 LL045_RS02000 WP_038599186.1 403667..404056(+) (ssbB) [Lactococcus lactis subsp. lactis strain EIP20A]
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YMDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=622369 LL045_RS02000 WP_038599186.1 403667..404056(+) (ssbB) [Lactococcus lactis subsp. lactis strain EIP20A]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCTTATGTCCG
TGTGACCTTGGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAGCGCGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TACATGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

89.922

100

0.899
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60.769

100

0.612
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.923

100

0.574
  ssbB/cilA Streptococcus pneumoniae Rx1

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae D39

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae R6

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

56.154

100

0.566
  ssbB/cilA Streptococcus mitis SK321

56.154

100

0.566
  ssbA Streptococcus mutans UA159

55.385

100

0.558
  ssb Latilactobacillus sakei subsp. sakei 23K

43.75

86.822

0.38
  ssbA Bacillus subtilis subsp. subtilis str. 168

44.762

81.395

0.364