Detailed information NTG0621621

Bioinformatically predicted

Overview

• Name: comYC
• Type: Machinery gene
• Locus tag: LK443_RS06575
• Genome accession: NZ_CP085953
• Coordinates: 1318729..1319025 (+)
• Length: 98 a.a.
• NCBI ID: WP_227931145.1
• Uniprot ID: -
• Organism: Granulicatella elegans strain FDAARGOS_1559
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1313729..1324025

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LK443_RS09475	-	1314308..1314439 (+)	132	WP_322563552.1	hypothetical protein	-
LK443_RS09480	-	1314613..1314858 (+)	246	WP_322563553.1	GNAT family N-acetyltransferase	-
LK443_RS06555 (LK443_06555)	-	1314973..1315953 (+)	981	WP_227931141.1	rhodanese-related sulfurtransferase	-
LK443_RS06560 (LK443_06560)	-	1316078..1316554 (+)	477	WP_227931142.1	VanZ family protein	-
LK443_RS06565 (LK443_06565)	comGA	1316651..1317709 (+)	1059	WP_227931143.1	competence type IV pilus ATPase ComGA	-
LK443_RS06570 (LK443_06570)	comGB	1317657..1318727 (+)	1071	WP_227931144.1	competence type IV pilus assembly protein ComGB	-
LK443_RS06575 (LK443_06575)	comYC	1318729..1319025 (+)	297	WP_227931145.1	competence type IV pilus major pilin ComGC	Machinery gene
LK443_RS06580 (LK443_06580)	comGD	1319048..1319494 (+)	447	WP_227931146.1	competence type IV pilus minor pilin ComGD	-
LK443_RS06585 (LK443_06585)	-	1319472..1319867 (+)	396	WP_227931147.1	hypothetical protein	-
LK443_RS06590 (LK443_06590)	-	1319875..1320384 (+)	510	WP_227931148.1	hypothetical protein	-
LK443_RS06595 (LK443_06595)	-	1320344..1320733 (+)	390	WP_227931149.1	hypothetical protein	-
LK443_RS06600 (LK443_06600)	-	1320799..1321680 (+)	882	WP_227931150.1	helix-turn-helix domain-containing protein	-
LK443_RS06605 (LK443_06605)	pgsA	1321691..1322278 (+)	588	WP_227931151.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
LK443_RS06610 (LK443_06610)	-	1322338..1323579 (+)	1242	WP_227931152.1	competence/damage-inducible protein A	-

Sequence

Protein

• Length: 98 a.a.
• Molecular weight: 11220.33 Da
• Isoelectric Point: 10.0567

>NTDB_id=621621 LK443_RS06575 WP_227931145.1 1318729..1319025(+) (comYC) [Granulicatella elegans strain FDAARGOS_1559]
MKKLLKKKKGFTLIELLICLFIIGLMMLLIIPNIANQRQKAQEKSDAAIVKVIENQKELYKLDNKPDKEPTIDDLQTGKY
ITQEQAEAYKKATKNSAQ

Nucleotide

• Length: 297 bp

>NTDB_id=621621 LK443_RS06575 WP_227931145.1 1318729..1319025(+) (comYC) [Granulicatella elegans strain FDAARGOS_1559]
ATGAAAAAATTACTAAAAAAGAAAAAAGGATTTACATTAATTGAGTTACTCATTTGTTTATTTATTATCGGGTTGATGAT
GCTACTTATTATTCCAAATATTGCAAATCAAAGACAAAAAGCACAGGAGAAATCGGATGCTGCGATTGTGAAAGTTATTG
AAAATCAGAAAGAACTATACAAATTAGACAATAAACCAGATAAAGAACCAACTATAGATGATTTACAGACGGGAAAATAT
ATTACTCAAGAACAAGCAGAAGCCTATAAAAAAGCAACGAAAAATTCAGCACAATAG

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (6-30)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYC	Streptococcus suis isolate S10	51.579	96.939	0.5
comGC/cglC	Streptococcus mitis NCTC 12261	42.857	100	0.459
comGC/cglC	Streptococcus mitis SK321	43.617	95.918	0.418
comYC	Streptococcus gordonii str. Challis substr. CH1	43.956	92.857	0.408
comGC	Lactococcus lactis subsp. cremoris KW2	46.429	85.714	0.398
comGC	Staphylococcus aureus N315	44.186	87.755	0.388
comGC	Staphylococcus aureus MW2	44.186	87.755	0.388
comGC/cglC	Streptococcus pneumoniae R6	45.238	85.714	0.388
comGC/cglC	Streptococcus pneumoniae D39	45.238	85.714	0.388
comGC/cglC	Streptococcus pneumoniae Rx1	45.238	85.714	0.388
comGC/cglC	Streptococcus pneumoniae TIGR4	45.238	85.714	0.388
comYC	Streptococcus mutans UA140	46.341	83.673	0.388
comYC	Streptococcus mutans UA159	46.341	83.673	0.388