Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LIS82_RS25010 Genome accession   NZ_CP085712
Coordinates   4861199..4861558 (-) Length   119 a.a.
NCBI ID   WP_053478582.1    Uniprot ID   -
Organism   Cytobacillus solani strain F27     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4856199..4866558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS82_RS25000 (LIS82_25060) - 4857743..4860562 (+) 2820 WP_252240240.1 DEAD/DEAH box helicase -
  LIS82_RS25005 (LIS82_25065) - 4861014..4861193 (-) 180 WP_252239518.1 hypothetical protein -
  LIS82_RS25010 (LIS82_25070) ssbB 4861199..4861558 (-) 360 WP_053478582.1 single-stranded DNA-binding protein Machinery gene
  LIS82_RS25015 (LIS82_25075) - 4861848..4862282 (+) 435 WP_252239519.1 YwpF-like family protein -
  LIS82_RS25020 (LIS82_25080) - 4862313..4862615 (-) 303 WP_053478580.1 hypothetical protein -
  LIS82_RS25025 (LIS82_25085) fabZ 4862777..4863199 (-) 423 WP_252239520.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LIS82_RS25030 (LIS82_25090) - 4863340..4863612 (-) 273 WP_252239521.1 DNA-directed RNA polymerase subunit beta -
  LIS82_RS25035 (LIS82_25095) - 4863637..4864479 (-) 843 WP_252239522.1 flagellar hook-basal body protein -
  LIS82_RS25040 (LIS82_25100) - 4864507..4865334 (-) 828 WP_252239523.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13483.23 Da        Isoelectric Point: 9.4327

>NTDB_id=619508 LIS82_RS25010 WP_053478582.1 4861199..4861558(-) (ssbB) [Cytobacillus solani strain F27]
MINQVTLVGRLTKDPELKRTAEGTPVTNVTLAVNRHYRNQQGEIDADFVQCTLWRKVAENTSRYCRKGSLVGITGRIQTS
HYENQAGKRVYVTEVWADSVKFLDQKKPDEAYAPAGREV

Nucleotide


Download         Length: 360 bp        

>NTDB_id=619508 LIS82_RS25010 WP_053478582.1 4861199..4861558(-) (ssbB) [Cytobacillus solani strain F27]
ATGATTAATCAAGTAACGCTCGTTGGCAGGTTAACCAAGGACCCCGAGCTGAAACGGACAGCGGAAGGAACCCCCGTTAC
AAATGTGACCCTTGCTGTTAATCGTCATTATCGAAATCAGCAAGGGGAAATTGATGCAGACTTTGTTCAATGCACACTTT
GGAGAAAGGTAGCAGAGAATACCTCAAGATACTGCCGAAAAGGCTCCCTAGTTGGAATTACCGGCAGAATACAGACAAGT
CATTATGAAAATCAAGCAGGTAAACGAGTCTACGTAACTGAAGTATGGGCAGATAGTGTCAAGTTTCTTGATCAAAAAAA
GCCGGATGAAGCGTATGCACCAGCAGGGAGAGAGGTGTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.964

93.277

0.597
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.944

89.916

0.521
  ssb Latilactobacillus sakei subsp. sakei 23K

50.909

92.437

0.471
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.17

89.076

0.42
  ssbA Streptococcus mutans UA159

43.396

89.076

0.387
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.453

89.076

0.378
  ssbB/cilA Streptococcus mitis NCTC 12261

42.453

89.076

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

41.509

89.076

0.37
  ssbB/cilA Streptococcus pneumoniae D39

41.509

89.076

0.37
  ssbB/cilA Streptococcus pneumoniae R6

41.509

89.076

0.37
  ssbB/cilA Streptococcus mitis SK321

41.509

89.076

0.37