Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   SIR_RS18070 Genome accession   NC_022246
Coordinates   1728661..1729056 (-) Length   131 a.a.
NCBI ID   WP_021003239.1    Uniprot ID   T1ZFH7
Organism   Streptococcus intermedius B196     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1723661..1734056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS18050 (SIR_1633) - 1724186..1725472 (-) 1287 WP_021003236.1 ABC transporter substrate-binding protein -
  SIR_RS18055 (SIR_1634) - 1725469..1726152 (-) 684 WP_021003237.1 response regulator transcription factor -
  SIR_RS18060 (SIR_1635) - 1726145..1727458 (-) 1314 WP_003075992.1 sensor histidine kinase -
  SIR_RS18065 (SIR_1636) - 1727458..1728444 (-) 987 WP_021003238.1 sugar ABC transporter substrate-binding protein -
  SIR_RS18070 (SIR_1637) ssbB/cilA 1728661..1729056 (-) 396 WP_021003239.1 single-stranded DNA-binding protein Machinery gene
  SIR_RS18075 (SIR_1638) ytpR 1729128..1729754 (-) 627 WP_021003240.1 YtpR family tRNA-binding protein -
  SIR_RS18080 (SIR_1639) - 1729771..1730088 (-) 318 WP_003074074.1 thioredoxin family protein -
  SIR_RS18085 (SIR_1640) - 1730085..1730372 (-) 288 WP_003074072.1 DUF4651 domain-containing protein -
  SIR_RS18090 (SIR_1641) pepA 1730492..1731556 (+) 1065 WP_021003241.1 glutamyl aminopeptidase -
  SIR_RS18095 (SIR_1642) - 1731845..1732405 (-) 561 WP_003074069.1 folate family ECF transporter S component -
  SIR_RS18100 (SIR_1643) - 1732587..1733891 (-) 1305 WP_021003242.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14710.62 Da        Isoelectric Point: 5.7866

>NTDB_id=61908 SIR_RS18070 WP_021003239.1 1728661..1729056(-) (ssbB/cilA) [Streptococcus intermedius B196]
MYNKVILIGRLVNTPEVNKTANDKSVVRATLAINRRYKGQNGEREADFVNVVVWGKLAETLASYATKGSLISLDGELRTR
RYEKDGVTHYVTEVLCNGFQLLESHAQRALRENNTGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=61908 SIR_RS18070 WP_021003239.1 1728661..1729056(-) (ssbB/cilA) [Streptococcus intermedius B196]
ATGTATAATAAAGTAATTTTAATTGGTCGCTTGGTTAATACACCAGAGGTAAATAAAACAGCTAATGATAAATCTGTGGT
ACGTGCAACGCTTGCCATCAACCGTCGCTATAAAGGGCAAAATGGCGAACGAGAAGCAGACTTTGTAAATGTCGTTGTTT
GGGGAAAGTTAGCTGAAACCTTAGCAAGTTATGCAACAAAAGGAAGTTTAATATCTCTTGATGGAGAACTTCGTACCCGC
CGCTATGAGAAAGACGGTGTGACACATTATGTAACGGAAGTGCTTTGCAATGGCTTCCAGCTATTAGAAAGTCATGCCCA
ACGAGCGCTTCGTGAAAATAATACAGGCGCAGATTTAGCAGATTTGGTTTTGGAAGAAGAAGAGTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZFH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

81.679

100

0.817
  ssbB/cilA Streptococcus mitis NCTC 12261

80.916

100

0.809
  ssbB/cilA Streptococcus pneumoniae Rx1

80.916

100

0.809
  ssbB/cilA Streptococcus pneumoniae D39

80.916

100

0.809
  ssbB/cilA Streptococcus pneumoniae R6

80.916

100

0.809
  ssbB/cilA Streptococcus mitis SK321

80.916

100

0.809
  ssbA Streptococcus mutans UA159

78.626

100

0.786
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.809

100

0.748
  ssbB Lactococcus lactis subsp. cremoris KW2

60.714

85.496

0.519
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.619

80.153

0.382
  ssb Latilactobacillus sakei subsp. sakei 23K

43.363

86.26

0.374

Multiple sequence alignment