Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LCH97_RS09685 Genome accession   NZ_CP085530
Coordinates   2038458..2039678 (-) Length   406 a.a.
NCBI ID   WP_227301546.1    Uniprot ID   -
Organism   Vogesella sp. XCS3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2033458..2044678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH97_RS09655 (LCH97_09655) tsaE 2034258..2034749 (+) 492 WP_227301541.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  LCH97_RS09660 (LCH97_09660) - 2034710..2035948 (+) 1239 WP_227301542.1 N-acetylmuramoyl-L-alanine amidase -
  LCH97_RS09665 (LCH97_09665) yacG 2036024..2036209 (-) 186 WP_081600596.1 DNA gyrase inhibitor YacG -
  LCH97_RS09670 (LCH97_09670) zapD 2036212..2036997 (-) 786 WP_227301543.1 cell division protein ZapD -
  LCH97_RS09675 (LCH97_09675) coaE 2036994..2037611 (-) 618 WP_227301544.1 dephospho-CoA kinase -
  LCH97_RS09680 (LCH97_09680) pilD 2037604..2038458 (-) 855 WP_227301545.1 A24 family peptidase Machinery gene
  LCH97_RS09685 (LCH97_09685) pilC 2038458..2039678 (-) 1221 WP_227301546.1 type II secretion system F family protein Machinery gene
  LCH97_RS09690 (LCH97_09690) pilF 2039697..2041409 (-) 1713 WP_370630685.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LCH97_RS09695 (LCH97_09695) - 2041560..2042537 (-) 978 WP_227301547.1 porin -
  LCH97_RS09700 (LCH97_09700) - 2042843..2044249 (+) 1407 WP_227301548.1 deoxyribodipyrimidine photo-lyase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43988.56 Da        Isoelectric Point: 9.2955

>NTDB_id=618858 LCH97_RS09685 WP_227301546.1 2038458..2039678(-) (pilC) [Vogesella sp. XCS3]
MAEAALKKPSSAIWNWEGKDKTGKIIRGEIRAESETVAKAQLRRQGINATKVSKKRAGFGKRITERDVALFTRQLATMMK
AGVPLLQAFDISAKGHSNAAFTKILLDVRSEVETGSNLADAFRKYPVYFDSLFCNLIAAGETGGVLDSLLDKLATYKEKI
IAIKGKIKSAMIYPSAIIVTAFVITAVILIYVIPAFKELFSSFGADLPGPTQLVIWLSDLFVEYWWLIFGGIGGTIWGLV
TVYKRSPAMQVGADRLLLRVPIIGDIVRKATIARWSRTLSTLFTAGVPLVEALDSVAGAAGNQVYADATKIIQADVSAGS
TLNFSMQRSNLFPNMVLQMTAIGEESGALDDMLDKVADFYEEEVDNAVAALSSLLEPMIMVILGVLIGGLVVAMYMPIFK
MGQVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=618858 LCH97_RS09685 WP_227301546.1 2038458..2039678(-) (pilC) [Vogesella sp. XCS3]
ATGGCGGAAGCTGCACTGAAGAAGCCCTCCTCGGCGATCTGGAACTGGGAGGGTAAGGACAAGACAGGCAAGATCATCCG
TGGCGAGATTCGTGCCGAGTCCGAGACGGTGGCCAAGGCACAGCTACGCCGCCAAGGCATCAACGCCACCAAGGTCAGCA
AGAAGCGTGCTGGTTTTGGCAAGCGCATTACTGAGCGGGACGTGGCGCTGTTTACGCGGCAACTGGCCACCATGATGAAA
GCGGGCGTGCCGCTGTTGCAGGCGTTTGACATCAGTGCCAAAGGCCATAGCAATGCGGCCTTTACCAAAATCCTGCTGGA
TGTGCGTTCCGAGGTGGAAACCGGTAGCAACCTGGCTGATGCCTTTCGCAAATATCCGGTGTATTTCGACAGCCTGTTTT
GCAATCTGATCGCGGCCGGTGAAACCGGCGGTGTGCTGGATTCGCTGCTGGACAAGCTGGCGACTTACAAGGAAAAGATC
ATCGCGATCAAGGGCAAGATCAAGTCGGCGATGATTTACCCGTCGGCAATTATCGTTACTGCCTTTGTAATCACGGCGGT
GATCCTGATCTATGTTATCCCCGCGTTTAAAGAACTGTTCTCCAGTTTTGGTGCCGACTTACCAGGGCCTACCCAGCTGG
TGATCTGGCTGTCTGATTTGTTTGTCGAGTATTGGTGGCTGATTTTTGGTGGTATCGGCGGCACTATCTGGGGGCTGGTG
ACGGTGTACAAGCGTTCGCCCGCCATGCAGGTAGGTGCGGACCGCTTGCTGCTGCGTGTACCGATTATTGGCGACATCGT
ACGAAAGGCCACGATTGCCCGCTGGTCACGGACCTTGTCTACGCTGTTTACCGCCGGTGTGCCTTTGGTCGAGGCGCTAG
ACTCGGTGGCTGGCGCTGCGGGCAACCAGGTCTATGCTGACGCAACCAAGATTATCCAGGCCGATGTCAGTGCCGGCTCC
ACGCTGAACTTTTCCATGCAGCGCAGTAATCTGTTCCCCAATATGGTGCTGCAGATGACGGCGATCGGCGAGGAATCCGG
CGCGCTGGATGACATGCTGGACAAAGTGGCGGACTTCTACGAAGAAGAAGTCGATAACGCCGTCGCCGCACTTTCCAGCC
TGCTGGAGCCGATGATCATGGTGATTCTGGGTGTGCTGATTGGTGGCCTGGTGGTGGCAATGTATATGCCGATCTTCAAG
ATGGGTCAGGTGGTGGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.941

100

0.532
  pilC Legionella pneumophila strain ERS1305867

53.367

98.768

0.527
  pilC Acinetobacter baylyi ADP1

52.58

100

0.527
  pilC Acinetobacter baumannii D1279779

51.889

97.783

0.507
  pilG Neisseria gonorrhoeae MS11

51.662

96.305

0.498
  pilG Neisseria meningitidis 44/76-A

50.895

96.305

0.49
  pilC Vibrio campbellii strain DS40M4

40.196

100

0.404
  pilC Vibrio cholerae strain A1552

40.806

97.783

0.399
  pilC Thermus thermophilus HB27

37.44

100

0.382