Detailed information NTG0618857

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LCH97_RS09680
• Genome accession: NZ_CP085530
• Coordinates: 2037604..2038458 (-)
• Length: 284 a.a.
• NCBI ID: WP_227301545.1
• Uniprot ID: -
• Organism: Vogesella sp. XCS3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2032604..2043458

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LCH97_RS09645 (LCH97_09645)	-	2032684..2033142 (+)	459	WP_227301539.1	GNAT family N-acetyltransferase	-
LCH97_RS09650 (LCH97_09650)	queG	2033171..2034220 (-)	1050	WP_227301540.1	tRNA epoxyqueuosine(34) reductase QueG	-
LCH97_RS09655 (LCH97_09655)	tsaE	2034258..2034749 (+)	492	WP_227301541.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	-
LCH97_RS09660 (LCH97_09660)	-	2034710..2035948 (+)	1239	WP_227301542.1	N-acetylmuramoyl-L-alanine amidase	-
LCH97_RS09665 (LCH97_09665)	yacG	2036024..2036209 (-)	186	WP_081600596.1	DNA gyrase inhibitor YacG	-
LCH97_RS09670 (LCH97_09670)	zapD	2036212..2036997 (-)	786	WP_227301543.1	cell division protein ZapD	-
LCH97_RS09675 (LCH97_09675)	coaE	2036994..2037611 (-)	618	WP_227301544.1	dephospho-CoA kinase	-
LCH97_RS09680 (LCH97_09680)	pilD	2037604..2038458 (-)	855	WP_227301545.1	A24 family peptidase	Machinery gene
LCH97_RS09685 (LCH97_09685)	pilC	2038458..2039678 (-)	1221	WP_227301546.1	type II secretion system F family protein	Machinery gene
LCH97_RS09690 (LCH97_09690)	pilF	2039697..2041409 (-)	1713	WP_370630685.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LCH97_RS09695 (LCH97_09695)	-	2041560..2042537 (-)	978	WP_227301547.1	porin	-

Sequence

Protein

• Length: 284 a.a.
• Molecular weight: 30787.81 Da
• Isoelectric Point: 6.8177

>NTDB_id=618857 LCH97_RS09680 WP_227301545.1 2037604..2038458(-) (pilD) [Vogesella sp. XCS3]
MLDELMLLPAAWQVGFALVLGLLVGSFLNVLIHRLPLMLEQQWQQECAVLQGQEPQPAANYNLFYPPSACVHCHAPIRAW
QNIPVLSYLWQRGRCASCGGAIAWRYPLVELVAGVAFAAFAAQLGLGWPWLAACFFSMLLLALALIDAKTQLLPDDLTLL
LLWAGLLFSLLGVTVPLADAVVGAMAGYLTLWSIYWLFKLATGKEGMGYGDFKLLAALGAWLGWSMLPLVVLLSSLVGAV
VGLLMVALRCHDRGQAMPFGPYLAAAGMIAFVWGKPIVAWYTGA

Nucleotide

• Length: 855 bp

>NTDB_id=618857 LCH97_RS09680 WP_227301545.1 2037604..2038458(-) (pilD) [Vogesella sp. XCS3]
ATGCTGGACGAATTGATGTTATTGCCCGCAGCGTGGCAGGTCGGTTTCGCGCTGGTGTTGGGTTTGCTGGTGGGCAGCTT
TCTGAATGTGCTGATACACCGCTTGCCATTGATGCTGGAGCAGCAGTGGCAGCAAGAGTGTGCGGTGTTGCAGGGGCAGG
AGCCGCAGCCTGCGGCCAACTACAATCTTTTTTACCCCCCATCCGCTTGTGTGCACTGCCATGCTCCTATCCGGGCCTGG
CAAAACATCCCGGTGCTCAGCTATCTGTGGCAGCGCGGGCGTTGTGCCAGCTGTGGTGGCGCCATTGCGTGGCGCTACCC
GCTGGTAGAGCTGGTCGCCGGTGTGGCATTTGCTGCTTTTGCCGCGCAGCTGGGGCTGGGCTGGCCATGGTTGGCCGCAT
GTTTTTTCAGCATGCTGCTGCTGGCGCTGGCGCTGATCGATGCCAAGACACAATTGCTACCCGATGACCTGACGCTACTA
CTGCTGTGGGCTGGTCTACTGTTTAGCCTGCTTGGCGTCACGGTTCCTTTGGCTGATGCGGTGGTCGGTGCCATGGCAGG
GTATCTGACCCTGTGGAGCATTTACTGGCTGTTCAAGCTGGCTACCGGTAAAGAGGGCATGGGCTATGGCGACTTCAAGC
TGTTGGCCGCATTGGGTGCCTGGCTGGGTTGGAGCATGCTGCCGCTAGTGGTGCTGCTCTCTTCGCTGGTAGGCGCTGTG
GTTGGCTTGCTGATGGTGGCTTTACGCTGCCACGATCGTGGCCAGGCGATGCCGTTTGGCCCCTATCTGGCCGCGGCGGG
CATGATTGCGTTTGTCTGGGGCAAGCCGATTGTGGCTTGGTATACCGGTGCCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.532	94.718	0.507
pilD	Vibrio campbellii strain DS40M4	50.735	95.775	0.486
pilD	Neisseria gonorrhoeae MS11	49.091	96.831	0.475
pilD	Acinetobacter nosocomialis M2	46.931	97.535	0.458
pilD	Acinetobacter baumannii D1279779	46.931	97.535	0.458