Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LG336_RS26270 Genome accession   NZ_CP085225
Coordinates   5471135..5471521 (-) Length   128 a.a.
NCBI ID   WP_404330420.1    Uniprot ID   -
Organism   Mesobacillus maritimus strain ADH-29     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5466135..5476521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG336_RS26240 (LG336_26130) - 5466597..5467061 (-) 465 WP_404330414.1 NUDIX hydrolase -
  LG336_RS26245 (LG336_26135) - 5467196..5467669 (-) 474 WP_404330415.1 DUF2062 domain-containing protein -
  LG336_RS26250 (LG336_26140) - 5467771..5469309 (-) 1539 WP_404330416.1 BCCT family transporter -
  LG336_RS26255 (LG336_26145) - 5469398..5470255 (-) 858 WP_404330417.1 MBL fold metallo-hydrolase -
  LG336_RS26260 (LG336_26150) - 5470276..5470704 (-) 429 WP_404330418.1 VOC family protein -
  LG336_RS26265 (LG336_26155) - 5470951..5471154 (-) 204 WP_404330419.1 hypothetical protein -
  LG336_RS26270 (LG336_26160) ssbB 5471135..5471521 (-) 387 WP_404330420.1 single-stranded DNA-binding protein Machinery gene
  LG336_RS26275 (LG336_26165) - 5471779..5472213 (+) 435 WP_404330421.1 YwpF family protein -
  LG336_RS26280 (LG336_26170) - 5472277..5472690 (-) 414 WP_404330422.1 hypothetical protein -
  LG336_RS26285 (LG336_26175) - 5473053..5473361 (+) 309 WP_404330423.1 DUF3221 domain-containing protein -
  LG336_RS26290 (LG336_26180) fabZ 5473456..5473878 (-) 423 WP_404330424.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LG336_RS26295 (LG336_26185) - 5473977..5474246 (-) 270 WP_404330425.1 DNA-directed RNA polymerase subunit beta -
  LG336_RS26300 (LG336_26190) - 5474632..5475633 (-) 1002 WP_404330426.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14683.75 Da        Isoelectric Point: 9.0702

>NTDB_id=616071 LG336_RS26270 WP_404330420.1 5471135..5471521(-) (ssbB) [Mesobacillus maritimus strain ADH-29]
MINQVILVGRLTRDPELKHTSDGRAYTNVTIAVTRQFRNANGELDTDFVQCILWRKTAENTALYCRKGSVIGVTGRIQTR
SYENQEKKRVYVTEVMAEHVQFLSRKTTENRAPQSPEVEVMPIEPVPF

Nucleotide


Download         Length: 387 bp        

>NTDB_id=616071 LG336_RS26270 WP_404330420.1 5471135..5471521(-) (ssbB) [Mesobacillus maritimus strain ADH-29]
ATGATCAATCAGGTCATTCTAGTAGGGCGGTTGACACGTGATCCCGAACTGAAACACACCAGTGATGGACGAGCATACAC
CAATGTCACCATAGCCGTGACCCGCCAATTTCGAAATGCAAACGGTGAGCTTGACACAGACTTTGTCCAATGCATCCTCT
GGAGAAAAACCGCAGAAAATACAGCCCTCTATTGCCGAAAAGGCTCCGTTATTGGCGTAACAGGTAGGATTCAAACCCGC
TCTTATGAAAATCAAGAAAAAAAGCGAGTTTACGTCACCGAAGTCATGGCCGAACATGTCCAATTTCTTAGCAGAAAAAC
AACCGAAAACCGAGCACCACAATCACCAGAAGTGGAGGTCATGCCGATTGAACCGGTCCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.393

87.5

0.555
  ssb Latilactobacillus sakei subsp. sakei 23K

57.143

87.5

0.5
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.075

83.594

0.469
  ssbB/cilA Streptococcus mitis NCTC 12261

41.667

100

0.43
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.667

100

0.43
  ssbB/cilA Streptococcus pneumoniae Rx1

40.909

100

0.422
  ssbB/cilA Streptococcus pneumoniae D39

40.909

100

0.422
  ssbB/cilA Streptococcus pneumoniae R6

40.909

100

0.422
  ssbB/cilA Streptococcus mitis SK321

40.909

100

0.422
  ssbB Streptococcus sobrinus strain NIDR 6715-7

38.636

100

0.398
  ssbA Streptococcus mutans UA159

38.636

100

0.398