Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | LG312_RS00020 | Genome accession | NZ_CP085221 |
| Coordinates | 4649..5092 (+) | Length | 147 a.a. |
| NCBI ID | WP_404299546.1 | Uniprot ID | - |
| Organism | Halomonas sp. strain DBC-59 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1..10092
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LG312_RS00005 (LG312_00005) | - | 12..1130 (+) | 1119 | WP_404297303.1 | ISAs1 family transposase | - |
| LG312_RS00010 (LG312_00010) | pilC | 1232..2467 (-) | 1236 | WP_404297353.1 | type II secretion system F family protein | Machinery gene |
| LG312_RS00015 (LG312_00015) | pilB | 2511..4307 (-) | 1797 | WP_404297355.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LG312_RS00020 (LG312_00020) | pilA | 4649..5092 (+) | 444 | WP_404299546.1 | pilin | Machinery gene |
| LG312_RS00025 (LG312_00025) | - | 5205..6932 (-) | 1728 | WP_404297357.1 | Wzy polymerase domain-containing protein | - |
| LG312_RS00030 (LG312_00030) | - | 7170..7592 (+) | 423 | WP_379761379.1 | phasin family protein | - |
| LG312_RS00035 (LG312_00035) | - | 7734..8255 (+) | 522 | WP_404297359.1 | hypothetical protein | - |
| LG312_RS00040 (LG312_00040) | - | 8252..9397 (+) | 1146 | WP_404297360.1 | diguanylate cyclase domain-containing protein | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 14955.85 Da Isoelectric Point: 4.3939
>NTDB_id=615976 LG312_RS00020 WP_404299546.1 4649..5092(+) (pilA) [Halomonas sp. strain DBC-59]
MKKYVKHGQGGFTLIELMIVVAIIGILAAIAIPAYQDYTIRARVSEAMAAASAAKVTVAENAASGQGDLSSGYDAPTATD
NVTSVAIDGSDGEITITTTAQAGNGTIFFTPTAAGAALVAGTPPGDRIAWDCTGGTLVDQYRPSECR
MKKYVKHGQGGFTLIELMIVVAIIGILAAIAIPAYQDYTIRARVSEAMAAASAAKVTVAENAASGQGDLSSGYDAPTATD
NVTSVAIDGSDGEITITTTAQAGNGTIFFTPTAAGAALVAGTPPGDRIAWDCTGGTLVDQYRPSECR
Nucleotide
Download Length: 444 bp
>NTDB_id=615976 LG312_RS00020 WP_404299546.1 4649..5092(+) (pilA) [Halomonas sp. strain DBC-59]
ATGAAGAAGTATGTCAAGCACGGTCAGGGTGGTTTTACGCTGATCGAGCTGATGATTGTGGTGGCGATTATCGGGATATT
GGCAGCAATCGCCATTCCGGCTTATCAAGATTATACAATAAGAGCTCGCGTTTCGGAGGCGATGGCAGCAGCTTCTGCAG
CAAAAGTAACTGTTGCAGAGAATGCCGCGAGCGGTCAAGGCGATCTTTCTTCTGGATATGATGCCCCGACCGCTACAGAC
AATGTGACTAGTGTAGCTATTGATGGATCTGATGGCGAAATTACTATTACCACGACTGCCCAGGCTGGTAATGGCACAAT
TTTCTTTACGCCTACAGCTGCTGGTGCTGCGTTGGTTGCAGGTACTCCGCCAGGCGATCGTATAGCTTGGGACTGTACTG
GTGGGACCCTCGTTGATCAGTACCGCCCCTCTGAATGTAGATAA
ATGAAGAAGTATGTCAAGCACGGTCAGGGTGGTTTTACGCTGATCGAGCTGATGATTGTGGTGGCGATTATCGGGATATT
GGCAGCAATCGCCATTCCGGCTTATCAAGATTATACAATAAGAGCTCGCGTTTCGGAGGCGATGGCAGCAGCTTCTGCAG
CAAAAGTAACTGTTGCAGAGAATGCCGCGAGCGGTCAAGGCGATCTTTCTTCTGGATATGATGCCCCGACCGCTACAGAC
AATGTGACTAGTGTAGCTATTGATGGATCTGATGGCGAAATTACTATTACCACGACTGCCCAGGCTGGTAATGGCACAAT
TTTCTTTACGCCTACAGCTGCTGGTGCTGCGTTGGTTGCAGGTACTCCGCCAGGCGATCGTATAGCTTGGGACTGTACTG
GTGGGACCCTCGTTGATCAGTACCGCCCCTCTGAATGTAGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
50.303 |
100 |
0.565 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
57.343 |
97.279 |
0.558 |
| pilA2 | Legionella pneumophila str. Paris |
57.343 |
97.279 |
0.558 |
| comP | Acinetobacter baylyi ADP1 |
45.513 |
100 |
0.483 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
36.842 |
100 |
0.476 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
41.259 |
97.279 |
0.401 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
38.926 |
100 |
0.395 |
| pilA | Pseudomonas aeruginosa PAK |
38.356 |
99.32 |
0.381 |