Detailed information NTG0615974

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: LG312_RS00010
• Genome accession: NZ_CP085221
• Coordinates: 1232..2467 (-)
• Length: 411 a.a.
• NCBI ID: WP_404297353.1
• Uniprot ID: -
• Organism: Halomonas sp. strain DBC-59
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1..7467

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LG312_RS00005 (LG312_00005)	-	12..1130 (+)	1119	WP_404297303.1	ISAs1 family transposase	-
LG312_RS00010 (LG312_00010)	pilC	1232..2467 (-)	1236	WP_404297353.1	type II secretion system F family protein	Machinery gene
LG312_RS00015 (LG312_00015)	pilB	2511..4307 (-)	1797	WP_404297355.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LG312_RS00020 (LG312_00020)	pilA	4649..5092 (+)	444	WP_404299546.1	pilin	Machinery gene
LG312_RS00025 (LG312_00025)	-	5205..6932 (-)	1728	WP_404297357.1	Wzy polymerase domain-containing protein	-

Sequence

Protein

• Length: 411 a.a.
• Molecular weight: 45146.05 Da
• Isoelectric Point: 10.1170

>NTDB_id=615974 LG312_RS00010 WP_404297353.1 1232..2467(-) (pilC) [Halomonas sp. strain DBC-59]
MATPRKLRPQQKTKLYRWNWTGKGPNGRKVGGEIIAPQKVEVERILSGQNILIKSIKRKSGFGGGMGKIKPRDIMLFARQ
MATMIRAGVPVLQAFQVVAESLKKPAMSALVQELMNDVAAGASFSDALKRHPQHFDRLFANLVEAGEQSGSLDKMLDRVA
TYKEKIELLKGRVKKALWYPAAVIAVGIGVTALLLIKVVPQFESLFQGFGAELPAMTRMTISMSEFAQAYWWWFVGGVVA
FIYLIRTGMKRSEAFAYRMHAMSLKVPVLGEILDKSSVARYSRTLATTFGAGVPLVEALDTAAGATGNKVYERAVAQIRE
DVSTGQQLAFAMRMTERFPALAVQMVGIGEESGALDAMLNRVADYYEEEVDNMVDTLTSLLEPFIIVVLGVLVGGLVISM
YLPIFELGSVI

Nucleotide

• Length: 1236 bp

>NTDB_id=615974 LG312_RS00010 WP_404297353.1 1232..2467(-) (pilC) [Halomonas sp. strain DBC-59]
ATGGCAACACCGCGGAAACTGCGCCCCCAACAGAAGACCAAGCTCTACCGCTGGAACTGGACCGGCAAGGGCCCCAACGG
GCGCAAGGTGGGGGGCGAGATCATCGCGCCCCAGAAAGTCGAAGTCGAAAGAATTCTCTCCGGCCAGAACATCCTCATCA
AGAGCATCAAGCGCAAGAGCGGGTTCGGCGGCGGCATGGGCAAGATCAAGCCCCGCGATATCATGCTGTTCGCCCGCCAG
ATGGCCACCATGATCCGCGCCGGCGTGCCGGTGCTGCAGGCCTTTCAGGTGGTGGCAGAAAGCCTCAAGAAGCCGGCCAT
GAGCGCGCTGGTGCAGGAGCTGATGAACGACGTGGCCGCCGGCGCCTCGTTCTCGGATGCCCTCAAGCGCCACCCCCAGC
ACTTCGACCGGCTGTTTGCCAACCTGGTAGAAGCCGGCGAGCAGTCAGGCTCCCTGGACAAGATGCTCGACCGAGTGGCC
ACCTACAAGGAGAAGATCGAGCTGCTCAAGGGGCGCGTGAAGAAGGCGCTCTGGTACCCCGCGGCGGTGATCGCGGTGGG
TATCGGCGTTACCGCCCTGCTGCTGATCAAGGTGGTGCCCCAGTTCGAGAGCCTGTTCCAGGGCTTCGGGGCCGAGCTGC
CCGCCATGACGCGCATGACCATCTCCATGTCCGAGTTTGCCCAGGCCTACTGGTGGTGGTTCGTCGGTGGCGTGGTGGCG
TTTATTTATTTGATACGCACCGGCATGAAACGCTCCGAGGCCTTCGCCTACCGCATGCACGCCATGTCGCTGAAGGTGCC
GGTGCTGGGCGAGATTCTGGATAAATCGTCCGTCGCGCGCTATTCGCGCACCCTGGCCACCACCTTCGGCGCCGGCGTGC
CGCTGGTGGAAGCGCTGGATACCGCCGCCGGCGCCACCGGCAACAAGGTCTACGAGCGCGCGGTGGCGCAGATCCGCGAA
GACGTTTCCACCGGCCAACAGCTCGCCTTCGCCATGCGCATGACAGAACGCTTCCCTGCGCTCGCCGTGCAGATGGTCGG
CATCGGCGAGGAATCCGGCGCCCTGGACGCCATGCTCAACCGGGTGGCGGACTACTACGAAGAAGAAGTCGACAACATGG
TCGACACCCTCACCTCGCTGCTCGAACCCTTTATCATCGTGGTGCTCGGCGTGCTGGTCGGCGGCCTGGTCATCTCCATG
TACCTGCCAATCTTCGAGCTCGGCTCGGTGATCTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (77-200)

• Type II secretion system (T2SS), protein F (T2SSF) (282-403)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	54.95	98.297	0.54
pilC	Acinetobacter baylyi ADP1	53.904	96.594	0.521
pilC	Acinetobacter baumannii D1279779	52.897	96.594	0.511
pilC	Legionella pneumophila strain ERS1305867	51.378	97.08	0.499
pilC	Vibrio campbellii strain DS40M4	44.417	100	0.445
pilC	Vibrio cholerae strain A1552	43.243	99.027	0.428
pilG	Neisseria meningitidis 44/76-A	42.677	96.35	0.411
pilG	Neisseria gonorrhoeae MS11	42.677	96.35	0.411