Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   LIN98_RS09740 Genome accession   NZ_CP085096
Coordinates   1990311..1990613 (-) Length   100 a.a.
NCBI ID   WP_005545595.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 4S     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1985311..1995613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN98_RS09725 - 1985991..1986428 (+) 438 WP_005572487.1 DNA polymerase III subunit psi -
  LIN98_RS09730 rimI 1986438..1986881 (+) 444 WP_005590261.1 ribosomal protein S18-alanine N-acetyltransferase -
  LIN98_RS09735 recC 1986883..1990299 (-) 3417 WP_014167945.1 exodeoxyribonuclease V subunit gamma -
  LIN98_RS09740 comQ 1990311..1990613 (-) 303 WP_005545595.1 DUF5374 domain-containing protein Machinery gene
  LIN98_RS09745 - 1990588..1991283 (-) 696 WP_148321775.1 DUF2572 family protein -
  LIN98_RS09750 - 1991280..1992023 (-) 744 WP_148326111.1 type II secretion system protein J -
  LIN98_RS10455 - 1992010..1992144 (-) 135 Protein_1874 type IV pilus minor pilin ComGF family protein -
  LIN98_RS10460 - 1992179..1992316 (-) 138 Protein_1875 type II secretion system protein -
  LIN98_RS09770 pal 1992926..1993393 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  LIN98_RS09775 tolB 1993408..1994688 (-) 1281 WP_005545588.1 Tol-Pal system beta propeller repeat protein TolB -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11662.57 Da        Isoelectric Point: 10.8981

>NTDB_id=615535 LIN98_RS09740 WP_005545595.1 1990311..1990613(-) (comQ) [Aggregatibacter actinomycetemcomitans strain 4S]
MISRLRKINYKGMSLLSLLVTLSLFSGIFLTFNQWGNVQRKSAVEIYQRFQAIQIAENQHQRRFLGLPCESQVQQNQIRF
QVICSQNQVSVKYPRGEISL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=615535 LIN98_RS09740 WP_005545595.1 1990311..1990613(-) (comQ) [Aggregatibacter actinomycetemcomitans strain 4S]
ATGATTTCGCGGTTACGGAAAATTAATTACAAAGGCATGAGCCTGTTGTCTTTATTGGTTACATTAAGTCTATTCAGCGG
GATTTTTCTCACGTTTAACCAATGGGGCAATGTGCAACGAAAAAGTGCGGTGGAAATTTATCAGCGTTTTCAAGCCATCC
AAATTGCCGAAAATCAGCATCAACGCCGTTTTCTCGGGTTGCCTTGTGAATCACAGGTGCAGCAAAATCAAATTCGTTTT
CAGGTGATTTGTTCGCAAAATCAGGTGTCGGTAAAATATCCTCGCGGTGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(61-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

56.818

88

0.5