Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   NQZ90_RS00345 Genome accession   NZ_CP102148
Coordinates   62182..62772 (+) Length   196 a.a.
NCBI ID   WP_004194470.1    Uniprot ID   -
Organism   Streptococcus suis strain DNC15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 57182..67772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS00335 (NQZ90_00335) - 58565..60088 (+) 1524 WP_257110265.1 quinol oxidase -
  NQZ90_RS00340 (NQZ90_00340) hexB 60206..62143 (+) 1938 WP_257110266.1 DNA mismatch repair endonuclease MutL Machinery gene
  NQZ90_RS00345 (NQZ90_00345) ruvA 62182..62772 (+) 591 WP_004194470.1 Holliday junction branch migration protein RuvA Machinery gene
  NQZ90_RS00350 (NQZ90_00350) - 63462..64031 (+) 570 WP_024398416.1 DNA-3-methyladenine glycosylase I -
  NQZ90_RS00355 (NQZ90_00355) cinA 64068..65249 (+) 1182 WP_257110267.1 competence/damage-inducible protein A Machinery gene
  NQZ90_RS00360 (NQZ90_00360) recA 65301..66452 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene
  NQZ90_RS00365 (NQZ90_00365) spx 66688..67086 (+) 399 WP_203200657.1 transcriptional regulator Spx -
  NQZ90_RS00370 (NQZ90_00370) - 67186..67452 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21725.08 Da        Isoelectric Point: 5.0727

>NTDB_id=615534 NQZ90_RS00345 WP_004194470.1 62182..62772(+) (ruvA) [Streptococcus suis strain DNC15]
MYDYIKGILTKITAKYIVVETQGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALDEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=615534 NQZ90_RS00345 WP_004194470.1 62182..62772(+) (ruvA) [Streptococcus suis strain DNC15]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATATATTGTGGTAGAAACGCAAGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCCTATTCAGGACAAGTCCAGCAAGAAGTGACTGTCTATACTCATCAAGTGATTCGAG
AAGATGCTCATTTGCTCTATGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACAGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATTGAGCAGAAGAACATTAC
CTACCTGACCAAGTTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACCTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCTCTTGATGAAGCTATGGAAGCCATGGAA
GCTCTTGGCTACCGACCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAACGACACCGCTGAGAATTACAT
CAAGTCCGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

75.635

100

0.76
  ruvA Streptococcus pneumoniae D39

75.635

100

0.76
  ruvA Streptococcus pneumoniae TIGR4

75.635

100

0.76
  ruvA Bacillus subtilis subsp. subtilis str. 168

38.916

100

0.403