Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   SII_RS08225 Genome accession   NC_022237
Coordinates   1707974..1708369 (-) Length   131 a.a.
NCBI ID   WP_020999177.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1702974..1713369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS08205 (SII_1617) - 1703499..1704785 (-) 1287 WP_020999174.1 ABC transporter substrate-binding protein -
  SII_RS08210 (SII_1618) - 1704782..1705465 (-) 684 WP_003076096.1 response regulator transcription factor -
  SII_RS08215 (SII_1619) - 1705458..1706771 (-) 1314 WP_020999175.1 sensor histidine kinase -
  SII_RS08220 (SII_1620) - 1706771..1707757 (-) 987 WP_020999176.1 sugar ABC transporter substrate-binding protein -
  SII_RS08225 (SII_1621) ssbB/cilA 1707974..1708369 (-) 396 WP_020999177.1 single-stranded DNA-binding protein Machinery gene
  SII_RS08230 (SII_1622) ytpR 1708441..1709067 (-) 627 WP_003076063.1 YtpR family tRNA-binding protein -
  SII_RS08235 (SII_1623) - 1709084..1709401 (-) 318 WP_003074074.1 thioredoxin family protein -
  SII_RS08240 (SII_1624) - 1709398..1709685 (-) 288 WP_003074072.1 DUF4651 domain-containing protein -
  SII_RS08245 (SII_1625) pepA 1709805..1710869 (+) 1065 WP_020999178.1 glutamyl aminopeptidase -
  SII_RS08250 (SII_1626) - 1711160..1711492 (+) 333 WP_020999179.1 HIRAN domain-containing protein -
  SII_RS08255 (SII_1627) - 1711775..1712335 (-) 561 WP_003075897.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14729.67 Da        Isoelectric Point: 5.9381

>NTDB_id=61552 SII_RS08225 WP_020999177.1 1707974..1708369(-) (ssbB/cilA) [Streptococcus intermedius C270]
MYNKVILIGRLVNTPEVNKTANDKSVVRATLAINRRYKGQNGEREADFVNVVVWGKLAETLASYATKGSLISLDGELRTR
RYEKDGVTHYVTEVLCNGFQLLESRAQRALRENNTGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=61552 SII_RS08225 WP_020999177.1 1707974..1708369(-) (ssbB/cilA) [Streptococcus intermedius C270]
ATGTATAATAAAGTAATTTTAATTGGTCGCTTGGTTAATACACCAGAGGTAAATAAAACAGCTAATGATAAATCTGTGGT
ACGTGCAACGCTTGCCATCAACCGTCGCTATAAAGGTCAAAATGGCGAACGAGAAGCAGACTTTGTAAATGTCGTTGTTT
GGGGAAAGTTAGCTGAAACTTTAGCAAGTTATGCAACAAAAGGAAGTTTAATATCTCTTGATGGAGAACTTCGTACCCGC
CGATATGAGAAAGACGGTGTGACACATTATGTAACGGAAGTGCTTTGCAATGGCTTCCAGCTATTAGAAAGTCGTGCCCA
ACGAGCGCTTCGCGAAAATAATACAGGCGCAGATTTAGCAGATTTGGTTTTGGAAGAAGAAGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

82.443

100

0.824
  ssbB/cilA Streptococcus mitis NCTC 12261

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae Rx1

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae D39

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae R6

81.679

100

0.817
  ssbB/cilA Streptococcus mitis SK321

81.679

100

0.817
  ssbA Streptococcus mutans UA159

79.389

100

0.794
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

85.496

0.527
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382

Multiple sequence alignment