Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   LIN95_RS07040 Genome accession   NZ_CP085094
Coordinates   1362729..1365158 (-) Length   809 a.a.
NCBI ID   WP_249849251.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 5S     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1357729..1370158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN95_RS07020 kdsB 1358965..1359738 (-) 774 WP_005567178.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LIN95_RS07025 - 1359740..1359919 (-) 180 WP_005567179.1 Trm112 family protein -
  LIN95_RS07030 lpxK 1359941..1360915 (-) 975 WP_005567180.1 tetraacyldisaccharide 4'-kinase -
  LIN95_RS07035 msbA 1360934..1362682 (-) 1749 WP_005567181.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  LIN95_RS07040 rec2 1362729..1365158 (-) 2430 WP_249849251.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LIN95_RS07045 dksA 1365456..1365893 (+) 438 WP_005556693.1 RNA polymerase-binding protein DksA -
  LIN95_RS07050 pcnB 1366010..1367476 (+) 1467 WP_050846365.1 polynucleotide adenylyltransferase PcnB -
  LIN95_RS07055 folK 1367469..1367969 (+) 501 WP_005586666.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  LIN95_RS07060 - 1368040..1368186 (-) 147 WP_005567188.1 hypothetical protein -
  LIN95_RS10785 - 1368267..1368401 (-) 135 WP_005567190.1 hypothetical protein -

Sequence

Protein


Download         Length: 809 a.a.        Molecular weight: 92070.85 Da        Isoelectric Point: 9.8054

>NTDB_id=615484 LIN95_RS07040 WP_249849251.1 1362729..1365158(-) (rec2) [Aggregatibacter actinomycetemcomitans strain 5S]
MSVSLDKLAIALIFSGLTLLFLPDRFLLSWQTACYLLLLLCPLMLLAYALRQDKIKQIVMWLLILMIQSAYVHQSAISIL
TQADNLANLPKTVHREFTVKEILHQQHYQTLVIRAKLAENLPEQRIYAQWKLKQPVNPGERYAGNLRLRALSSRLNFDGF
DRQPWYFGKHITAWAEIKSAVKLENVFSLRQTALNQALQQTENLPRQGLLLALGFGERFRLDQKTWQIYQKTNTAHLIAI
SGLHIGLAMMLGFTLARLLQFALPTRYISPTFPILCGFIFALLYSQLAGLAIPTLRAMIALAMLYAIQYWRRYWTVWQFL
LRVVALLIFIDPLMLLSTSFWLSVGAVTCLIVWCQYFPLSLLQWRGHSLANSPWRKVRYVFGLFHLQFGLLWLFTPIQLL
FFNGISLNSFIANVIAVPPYSFVLVPLVLFAVVTQGAWYSWQLANDLAEKITALLTPWQDDWLAISIPHSLWITLCLTFL
FLVALYVIYKPPKPITSTLALSRQHRFKGFHFNPERALSLPLRKSAYCVGGGLIALCCLTLISQSISRPNWQLETLDVGQ
GLATLIVKDGKGVLYDTGPSWKGGSMAQLEILPYLQRQGIDLEWLILSHDDNDHAGGAKDILAMYPHIQLTTASQKRYGS
QNTEKNDRTFCQAGKQWHWQGLHFTVLSPENIVPRAENRDSCTLLLTDGTHHILLTGDADLSVEYKILPKLGKIHVLQVG
HHGSKTSTGQALVQHIQPDIALISSGRWNPWHFPHKDVAARLQQQGSQIYNTAHSGQISLLFYNEEIKIQTARAEFSPWY
RRLIGLSTK

Nucleotide


Download         Length: 2430 bp        

>NTDB_id=615484 LIN95_RS07040 WP_249849251.1 1362729..1365158(-) (rec2) [Aggregatibacter actinomycetemcomitans strain 5S]
GTGAGCGTTTCGTTGGATAAGTTGGCTATAGCCCTGATTTTTAGCGGTTTAACATTATTGTTTTTGCCCGATCGCTTTTT
ATTATCGTGGCAAACGGCGTGCTATTTACTCCTCTTATTATGTCCACTCATGTTGCTTGCTTATGCCCTGCGACAGGACA
AAATCAAGCAAATAGTAATGTGGCTACTGATCTTGATGATTCAGTCCGCTTACGTCCACCAATCGGCAATTTCCATACTG
ACCCAGGCGGATAATCTTGCCAATCTGCCGAAAACCGTTCACCGCGAATTTACCGTCAAGGAAATTCTGCATCAGCAGCA
TTATCAAACCCTGGTTATTCGCGCCAAACTCGCCGAAAATCTTCCCGAACAACGTATTTACGCGCAATGGAAACTCAAGC
AACCAGTCAACCCCGGCGAACGTTACGCAGGCAATTTACGCTTGCGAGCGCTTTCTTCCCGCCTGAATTTTGACGGTTTT
GACCGCCAGCCATGGTATTTCGGCAAGCACATCACCGCTTGGGCAGAGATTAAAAGTGCGGTCAAATTGGAAAACGTTTT
TTCGTTACGCCAAACCGCTCTCAATCAAGCCTTACAACAAACGGAGAATTTACCCCGACAAGGCTTGTTGCTGGCACTCG
GTTTTGGCGAACGTTTCCGCTTAGACCAAAAAACTTGGCAAATTTATCAAAAAACAAATACGGCGCATTTAATTGCCATT
TCAGGGCTGCATATCGGACTGGCGATGATGCTGGGTTTTACCTTGGCGCGTCTACTGCAATTTGCCTTGCCGACGCGTTA
CATCAGCCCGACATTTCCGATTCTGTGCGGATTCATTTTTGCGTTGTTATACAGCCAACTGGCGGGGCTTGCTATTCCGA
CTTTACGCGCTATGATTGCGTTAGCCATGCTCTACGCGATTCAGTATTGGCGACGATATTGGACGGTATGGCAATTCTTG
TTAAGAGTGGTTGCCTTGCTGATTTTTATCGATCCGCTCATGTTACTTTCCACCAGCTTTTGGTTGTCGGTGGGCGCAGT
GACCTGTCTGATTGTTTGGTGTCAGTATTTTCCGTTGTCTCTATTGCAATGGCGCGGCCATTCCCTTGCCAATTCGCCGT
GGCGGAAAGTGCGGTATGTTTTCGGCTTGTTTCATTTGCAATTCGGTCTGCTCTGGCTGTTCACGCCCATTCAGCTGTTA
TTTTTTAACGGCATTTCGTTAAATAGTTTTATCGCCAATGTCATCGCAGTGCCGCCTTATAGCTTCGTTTTGGTCCCGTT
GGTGTTATTTGCCGTAGTCACCCAAGGTGCGTGGTATTCGTGGCAGCTCGCCAACGATTTGGCGGAAAAAATCACCGCAC
TTTTGACGCCCTGGCAGGATGACTGGTTGGCAATTTCCATTCCGCACAGTTTATGGATAACCCTATGTTTAACCTTTCTT
TTTTTAGTGGCGCTCTATGTTATTTATAAACCGCCCAAACCGATAACATCCACTTTAGCATTGTCAAGGCAGCACCGCTT
TAAAGGATTTCATTTTAATCCGGAACGCGCCTTAAGTTTACCGTTACGAAAAAGCGCTTATTGCGTGGGCGGTGGGCTGA
TTGCCCTGTGTTGCCTGACGTTAATTTCTCAGTCTATTTCACGTCCGAACTGGCAATTGGAAACCTTGGACGTGGGGCAA
GGGTTGGCAACTTTAATCGTGAAAGACGGCAAAGGCGTGCTTTACGATACCGGCCCGAGTTGGAAGGGCGGCAGTATGGC
ACAATTGGAAATTCTGCCTTATTTACAACGGCAAGGCATTGATTTGGAATGGCTGATATTAAGCCATGACGACAACGATC
ACGCAGGTGGTGCCAAAGATATTTTAGCAATGTATCCCCATATTCAACTGACCACCGCTTCACAAAAGCGATATGGTTCC
CAAAACACCGAAAAAAATGACCGCACTTTTTGTCAAGCCGGTAAACAATGGCATTGGCAGGGGTTGCATTTTACCGTGCT
ATCACCGGAGAATATCGTGCCCCGTGCGGAAAATCGGGATTCCTGCACACTTTTATTAACCGATGGCACGCACCATATTT
TGCTGACGGGCGACGCGGATCTTAGCGTGGAATATAAGATCCTACCGAAACTTGGCAAAATCCATGTGTTACAAGTAGGG
CATCACGGTAGCAAAACCTCGACGGGGCAGGCATTAGTGCAACATATTCAACCGGACATTGCGCTGATTTCCAGCGGACG
CTGGAACCCATGGCATTTTCCCCATAAAGACGTGGCGGCGCGCCTGCAACAACAAGGATCACAAATTTATAATACGGCGC
ATAGCGGGCAAATCAGTCTATTGTTCTACAATGAAGAGATCAAAATTCAGACCGCGCGCGCTGAATTTTCGCCTTGGTAT
CGCAGATTGATTGGCTTGAGCACGAAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(34-179)

Competence protein (Competence)

(213-486)

Metallo-beta-lactamase superfamily (Lactamase_B)

(557-745)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

52.593

100

0.527