Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LGO15_RS22880 Genome accession   NZ_CP084622
Coordinates   4544202..4544612 (-) Length   136 a.a.
NCBI ID   WP_226087968.1    Uniprot ID   -
Organism   Mesobacillus sp. S13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4539202..4549612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGO15_RS22865 - 4540389..4540961 (-) 573 WP_226086161.1 hypothetical protein -
  LGO15_RS22870 - 4541076..4543715 (-) 2640 WP_226086162.1 Ig-like domain-containing protein -
  LGO15_RS22875 - 4544003..4544209 (-) 207 WP_167830947.1 hypothetical protein -
  LGO15_RS22880 ssbB 4544202..4544612 (-) 411 WP_226087968.1 single-stranded DNA-binding protein Machinery gene
  LGO15_RS22885 - 4544873..4545307 (+) 435 WP_226086163.1 YwpF-like family protein -
  LGO15_RS22890 - 4545395..4545685 (-) 291 WP_167831148.1 hypothetical protein -
  LGO15_RS22895 fabZ 4546167..4546589 (-) 423 WP_226086164.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LGO15_RS22900 - 4546677..4546940 (-) 264 WP_226086165.1 DNA-directed RNA polymerase subunit beta -
  LGO15_RS22905 - 4546960..4547808 (-) 849 WP_226086166.1 flagellar hook-basal body protein -
  LGO15_RS22910 - 4547915..4548733 (-) 819 WP_226086167.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15116.16 Da        Isoelectric Point: 9.0513

>NTDB_id=612032 LGO15_RS22880 WP_226087968.1 4544202..4544612(-) (ssbB) [Mesobacillus sp. S13]
MINQVTLVGRLTKDPELRFTPDGKAVSNITLAVNRHYKNASGEIEADFVHCILWGKTAENTANYCKKGAVLGVTGRIQTR
NYDNQEGKRVYVTEVVAEGVRFLSSKPAGTRETQQTSQAPMQPQPVPIQREELPFV

Nucleotide


Download         Length: 411 bp        

>NTDB_id=612032 LGO15_RS22880 WP_226087968.1 4544202..4544612(-) (ssbB) [Mesobacillus sp. S13]
GTGATCAATCAAGTTACGCTAGTAGGTCGGCTGACGAAAGATCCGGAACTCAGGTTCACCCCTGACGGCAAAGCGGTGTC
GAATATTACGCTTGCGGTGAACCGGCATTATAAGAACGCCAGCGGTGAAATCGAGGCTGATTTTGTCCATTGCATCCTTT
GGGGCAAAACGGCAGAAAACACGGCAAATTACTGTAAAAAAGGTGCAGTGCTCGGGGTGACCGGACGAATCCAGACCCGT
AATTACGATAACCAGGAAGGCAAACGTGTTTATGTGACAGAAGTAGTTGCTGAGGGAGTGCGATTTTTAAGTTCGAAGCC
GGCAGGTACGCGGGAAACTCAGCAGACATCGCAGGCGCCCATGCAGCCACAGCCTGTTCCGATACAAAGGGAGGAGCTTC
CATTTGTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

69.159

78.676

0.544
  ssb Latilactobacillus sakei subsp. sakei 23K

42.353

100

0.529
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

77.941

0.5
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.912

100

0.419
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.481

99.265

0.412
  ssbB/cilA Streptococcus mitis NCTC 12261

41.481

99.265

0.412
  ssbB/cilA Streptococcus pneumoniae Rx1

40.741

99.265

0.404
  ssbB/cilA Streptococcus pneumoniae D39

40.741

99.265

0.404
  ssbB/cilA Streptococcus pneumoniae R6

40.741

99.265

0.404
  ssbB/cilA Streptococcus mitis SK321

40.741

99.265

0.404
  ssbA Streptococcus mutans UA159

37.778

99.265

0.375