Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BASU_RS16535 Genome accession   NC_022081
Coordinates   3368495..3369184 (-) Length   229 a.a.
NCBI ID   WP_020956418.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5113     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3363495..3374184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BASU_RS16500 (BASU_3174) - 3363692..3364174 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BASU_RS16505 (BASU_3175) flgM 3364189..3364455 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BASU_RS16510 (BASU_3176) - 3364525..3364944 (-) 420 WP_007407479.1 TIGR03826 family flagellar region protein -
  BASU_RS16515 (BASU_3177) comFC 3365018..3365707 (-) 690 WP_197538283.1 phosphoribosyltransferase family protein Machinery gene
  BASU_RS16520 (BASU_3178) - 3365713..3365997 (-) 285 WP_007407481.1 competence protein ComFB -
  BASU_RS16525 (BASU_3179) comFA 3366055..3367440 (-) 1386 WP_020956417.1 DEAD/DEAH box helicase Machinery gene
  BASU_RS16530 (BASU_3180) - 3367549..3368397 (-) 849 WP_007407483.1 DegV family protein -
  BASU_RS16535 (BASU_3181) degU 3368495..3369184 (-) 690 WP_020956418.1 two-component system response regulator DegU Regulator
  BASU_RS16540 (BASU_3182) degS 3369261..3370424 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BASU_RS16545 (BASU_3183) - 3370647..3371294 (+) 648 WP_007614107.1 YigZ family protein -
  BASU_RS16550 (BASU_3184) - 3371299..3372519 (+) 1221 WP_020956419.1 LCP family protein -
  BASU_RS16555 (BASU_3185) - 3372626..3373702 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25824.49 Da        Isoelectric Point: 5.9446

>NTDB_id=61141 BASU_RS16535 WP_020956418.1 3368495..3369184(-) (degU) [Bacillus velezensis UCMB5113]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVGVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=61141 BASU_RS16535 WP_020956418.1 3368495..3369184(-) (degU) [Bacillus velezensis UCMB5113]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGTGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGGCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-219)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment