Detailed information NTG0610817

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: LEO78_RS19015
• Genome accession: NZ_CP084353
• Coordinates: 4177396..4178637 (+)
• Length: 413 a.a.
• NCBI ID: WP_226032468.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain 71317
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4172396..4183637

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LEO78_RS18990 (LEO78_18990)	ampD	4172758..4173330 (-)	573	WP_124251318.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
LEO78_RS18995 (LEO78_18995)	-	4173478..4173948 (+)	471	WP_024944772.1	TIGR02281 family clan AA aspartic protease	-
LEO78_RS19000 (LEO78_19000)	nadC	4173954..4174811 (+)	858	WP_226032466.1	carboxylating nicotinate-nucleotide diphosphorylase	-
LEO78_RS19005 (LEO78_19005)	-	4175134..4175574 (+)	441	WP_226032467.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
LEO78_RS19010 (LEO78_19010)	pilB	4175565..4177280 (+)	1716	WP_180807586.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
LEO78_RS19015 (LEO78_19015)	pilC	4177396..4178637 (+)	1242	WP_226032468.1	type II secretion system F family protein	Machinery gene
LEO78_RS19020 (LEO78_19020)	pilD	4178660..4179532 (+)	873	WP_226032469.1	A24 family peptidase	Machinery gene
LEO78_RS19025 (LEO78_19025)	coaE	4179552..4180166 (+)	615	WP_226032470.1	dephospho-CoA kinase	-
LEO78_RS19030 (LEO78_19030)	zapD	4180204..4180926 (+)	723	WP_024945431.1	cell division protein ZapD	-
LEO78_RS19035 (LEO78_19035)	yacG	4180936..4181130 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
LEO78_RS19040 (LEO78_19040)	mutT	4181191..4181604 (-)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
LEO78_RS19045 (LEO78_19045)	-	4181613..4182797 (-)	1185	WP_226032471.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 413 a.a.
• Molecular weight: 45436.60 Da
• Isoelectric Point: 9.8637

>NTDB_id=610817 LEO78_RS19015 WP_226032468.1 4177396..4178637(+) (pilC) [Aeromonas hydrophila strain 71317]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIA
LAIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide

• Length: 1242 bp

>NTDB_id=610817 LEO78_RS19015 WP_226032468.1 4177396..4178637(+) (pilC) [Aeromonas hydrophila strain 71317]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGAGTGAACCGCAAGGGCCA
GAAGGTCTCCGGCGAATTGCAGGCCGACAGCATCAACACGGTCAAGGCAGAGCTACGCAAACAGGGTGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATCGCCGTCGTCTCCCGC
CAGATCACCACCATGCTGTCAGCCGGTGTACCTCTGGTTCAGAGCTTGCAAATCATCGCTCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTCATGGGGCAGATTGCAGCCGATGTGGAGACCGGTACTCCCATGTCCGAGGCGCTGCGCCGCCATCCCC
GTCACTTTGACGATCTCTACTGCGATCTGGTGGAGGCTGGCGAACAATCCGGCGCCCTGGAGACCATCTACGATCGCATC
GCTACCTATCGCGAGAAATCGGAAGCACTCAAGTCCAAGATCAAGAAAGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATTGTCGTTACCTCCATCCTGCTGCTGTTTGTTATTCCCCAGTTCGAAGACATCTTCAAGAGTTTTGGTGCCGAGC
TGCCCATCTTCACCCAGTTCGTCATAGGTATCTCGCGCTTCATGCAGAACTGGTGGTATGTGATCTTTGGCGGCATAGCG
CTCGCCATCTTTCTCTACGTGCGCGCCTGGCGCGCCTCCCAGAAGGTCAAGGACAACACCGACAAGTTCATACTGACCAT
CCCGGTGGTTGGCATGATATTGCACAAGGCCGCCATGGCCCGTTTCGCCCGTACCCTCTCCACCACCTTCTCCGCCGGCA
TTCCACTGGTGGATGCTCTGATCTCTGCGGCAGGCGCCTCCGGCAACTATGTCTACCGCACTGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTCGATCTGTTCCCGGACATGGTTATCCAGATGGT
GATGATCGGTGAGGAGTCTGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAGCAGGAGGTAGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCACTTATCATGGTGGTGTTGGGGGTTCTGGTCGGCGGCATGGTGGTCGCC
ATGTATCTGCCCATCTTCAAACTGGGGTCGGTGATCCACTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (282-404)

• Type II secretion system (T2SS), protein F (T2SSF) (79-201)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	57.323	95.884	0.55
pilC	Acinetobacter baumannii D1279779	54	96.852	0.523
pilC	Legionella pneumophila strain ERS1305867	51.358	98.063	0.504
pilC	Acinetobacter baylyi ADP1	52.141	96.126	0.501
pilC	Vibrio cholerae strain A1552	47.739	96.368	0.46
pilC	Vibrio campbellii strain DS40M4	46.348	96.126	0.446
pilG	Neisseria gonorrhoeae MS11	40.247	98.063	0.395
pilG	Neisseria meningitidis 44/76-A	40	98.063	0.392
pilC	Thermus thermophilus HB27	37.75	96.852	0.366