Detailed information NTG0610818

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LEO78_RS19020
• Genome accession: NZ_CP084353
• Coordinates: 4178660..4179532 (+)
• Length: 290 a.a.
• NCBI ID: WP_226032469.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain 71317
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4173660..4184532

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LEO78_RS19000 (LEO78_19000)	nadC	4173954..4174811 (+)	858	WP_226032466.1	carboxylating nicotinate-nucleotide diphosphorylase	-
LEO78_RS19005 (LEO78_19005)	-	4175134..4175574 (+)	441	WP_226032467.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
LEO78_RS19010 (LEO78_19010)	pilB	4175565..4177280 (+)	1716	WP_180807586.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
LEO78_RS19015 (LEO78_19015)	pilC	4177396..4178637 (+)	1242	WP_226032468.1	type II secretion system F family protein	Machinery gene
LEO78_RS19020 (LEO78_19020)	pilD	4178660..4179532 (+)	873	WP_226032469.1	A24 family peptidase	Machinery gene
LEO78_RS19025 (LEO78_19025)	coaE	4179552..4180166 (+)	615	WP_226032470.1	dephospho-CoA kinase	-
LEO78_RS19030 (LEO78_19030)	zapD	4180204..4180926 (+)	723	WP_024945431.1	cell division protein ZapD	-
LEO78_RS19035 (LEO78_19035)	yacG	4180936..4181130 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
LEO78_RS19040 (LEO78_19040)	mutT	4181191..4181604 (-)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
LEO78_RS19045 (LEO78_19045)	-	4181613..4182797 (-)	1185	WP_226032471.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32426.69 Da
• Isoelectric Point: 6.7408

>NTDB_id=610818 LEO78_RS19020 WP_226032469.1 4178660..4179532(+) (pilD) [Aeromonas hydrophila strain 71317]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEDRYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLTGGFAPLADAVIGAMAGYLVLWGLYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=610818 LEO78_RS19020 WP_226032469.1 4178660..4179532(+) (pilD) [Aeromonas hydrophila strain 71317]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTGATACATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCAGAGACACAGCCGCAACAGGAAGATCGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAAAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC
GGCCCGTTATCCTCTGGTGGAACTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCGACATTCGCACCGGGTTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCTGACCAG
CTGACCCTGCCACTGCTGTGGGGCGGCCTGTTGTTCAATCTGACAGGGGGATTTGCACCGCTGGCCGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGGGCCTCTACTGGGGCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTACTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATTCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTACCT
GGCCATCGCCGGCTGGATCGCACTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.976	98.966	0.603
pilD	Vibrio campbellii strain DS40M4	55.052	98.966	0.545
pilD	Acinetobacter baumannii D1279779	53.873	97.931	0.528
pilD	Acinetobacter nosocomialis M2	53.873	97.931	0.528
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459