Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LDO52_RS01160 Genome accession   NZ_CP084300
Coordinates   252883..254112 (-) Length   409 a.a.
NCBI ID   WP_100329414.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain XMC5X702     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 247883..259112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO52_RS01130 (LDO52_01130) - 249261..249584 (+) 324 WP_004281089.1 pyrimidine/purine nucleoside phosphorylase -
  LDO52_RS01135 (LDO52_01135) rlmB 249721..250470 (+) 750 WP_005168959.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LDO52_RS01140 (LDO52_01140) - 250477..251400 (+) 924 WP_005094400.1 DMT family transporter -
  LDO52_RS01145 (LDO52_01145) coaE 251422..252021 (-) 600 WP_100329415.1 dephospho-CoA kinase -
  LDO52_RS16380 pilD 252023..252883 (-) 861 WP_074383650.1 prepilin peptidase Machinery gene
  LDO52_RS01160 (LDO52_01160) pilC 252883..254112 (-) 1230 WP_100329414.1 type II secretion system F family protein Machinery gene
  LDO52_RS01165 (LDO52_01165) pilB 254144..255856 (-) 1713 WP_005094394.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LDO52_RS01170 (LDO52_01170) tpiA 256134..256925 (+) 792 WP_005094392.1 triose-phosphate isomerase -
  LDO52_RS01175 (LDO52_01175) secG 256939..257268 (+) 330 WP_005094388.1 preprotein translocase subunit SecG -
  LDO52_RS01205 (LDO52_01205) rimP 258444..258968 (+) 525 WP_005094386.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44922.44 Da        Isoelectric Point: 9.9407

>NTDB_id=610502 LDO52_RS01160 WP_100329414.1 252883..254112(-) (pilC) [Acinetobacter pseudolwoffii strain XMC5X702]
MAAVKKGQMMPIFSYEGIDRKGAKIKGELPARNMALAKVTLRKQGISIKTIREKKKNILEGLMKKRVSTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDKLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPAAVVVVALIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIAIGAII
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEDAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=610502 LDO52_RS01160 WP_100329414.1 252883..254112(-) (pilC) [Acinetobacter pseudolwoffii strain XMC5X702]
ATGGCAGCAGTAAAGAAAGGCCAGATGATGCCGATCTTCAGCTATGAAGGAATTGATCGTAAAGGGGCAAAGATCAAGGG
GGAATTGCCGGCGCGCAACATGGCACTGGCCAAAGTGACGCTCAGAAAACAGGGCATCAGCATCAAGACCATTCGGGAAA
AGAAAAAAAACATTCTCGAAGGCTTAATGAAAAAACGTGTCAGCACACTGGATATTACGATTTTTACCCGACAGCTCGCG
ACCATGATGAAAGCCGGCGTACCTTTAGTACAAGGCTTTGAAATTGTTGCAGAGGGTCTGGAGAATCCAGCCATGCGTGA
AGTCGTTCTGGGGATTAAAGGTGAGGTGGAAGGTGGTAATACCTTTGCCGGTGCACTGCGTAAATACCCGCAATACTTCG
ATAAACTATTTTGTTCACTGGTCGAATCGGGTGAACAATCCGGTGCGCTAGAAACCATGCTGGATCGGGTCGCGATCTAC
AAGGAAAAAAGTGAACTGCTCAAGCAAAAAATTAAAAAAGCCATGAAGTACCCGGCTGCGGTGGTCGTGGTCGCGCTGAT
TGTCACGATTATTCTAATGGTAAAAGTGGTCCCGGTTTTCCAGGATTTATTCTCTTCATTTGGTGCTGACTTACCGGCTT
TTACCAAAATGGTAGTCAATATGTCGGAATGGATGCAAAAATATTGGTTCCTGCTCATTATTGCCATTGGGGCCATCATT
ACGGCTTTTCTGGAAGCAAAAAAACGCAGTAAAAAATTCCGCGACTTTCTGGATAAAGCAGCACTTAAAGCACCTATTTT
CGGTGATCTGGTGTATAAAGCGATTATTGCCCGTTATAGCCGTACCTTGGCCACCACTTTTGCAGCCGGTGTACCCTTGA
TTGATGCACTAGAATCTACTGCCGGCGCAACCAATAACGTGGTGTATGAAGATGCAGTCATGAAAATCCGCGAAGATGTT
GCCACTGGTCAGCAATTACAGTTTGCCATGCGGGTGACCAACAAGTTTCCATCTATGGCCGTGCAAATGGTCGCCATTGG
TGAGGAATCCGGTGCGTTAGATGCCATGCTGGATAAAGTTGCTACCCATTATGAAAATGAAGTCGACAATGCCGTAGACG
GTCTCACTTCCATGATGGAGCCCTTGATCATGGCTGTTCTCGGTGTACTTGTCGGTGGTCTGGTGATTGCCATGTACCTT
CCAATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.435

99.511

0.89
  pilC Acinetobacter baylyi ADP1

83.047

99.511

0.826
  pilC Pseudomonas stutzeri DSM 10701

62.312

97.311

0.606
  pilC Legionella pneumophila strain ERS1305867

53.904

97.066

0.523
  pilG Neisseria gonorrhoeae MS11

45.98

97.311

0.447
  pilG Neisseria meningitidis 44/76-A

45.98

97.311

0.447
  pilC Vibrio cholerae strain A1552

43.873

99.756

0.438
  pilC Vibrio campbellii strain DS40M4

42.065

97.066

0.408
  pilC Thermus thermophilus HB27

37.037

99.022

0.367