NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	LDO52_RS16380	Genome accession	NZ_CP084300
Coordinates	252023..252883 (-)	Length	286 a.a.
NCBI ID	WP_074383650.1	Uniprot ID	A0A2H9YR93
Organism	Acinetobacter pseudolwoffii strain XMC5X702
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 247023..257883

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO52_RS01125 (LDO52_01125)	recN	247185..248846 (-)	1662	WP_225553544.1	DNA repair protein RecN	-
LDO52_RS01130 (LDO52_01130)	-	249261..249584 (+)	324	WP_004281089.1	pyrimidine/purine nucleoside phosphorylase	-
LDO52_RS01135 (LDO52_01135)	rlmB	249721..250470 (+)	750	WP_005168959.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
LDO52_RS01140 (LDO52_01140)	-	250477..251400 (+)	924	WP_005094400.1	DMT family transporter	-
LDO52_RS01145 (LDO52_01145)	coaE	251422..252021 (-)	600	WP_100329415.1	dephospho-CoA kinase	-
LDO52_RS16380	pilD	252023..252883 (-)	861	WP_074383650.1	prepilin peptidase	Machinery gene
LDO52_RS01160 (LDO52_01160)	pilC	252883..254112 (-)	1230	WP_100329414.1	type II secretion system F family protein	Machinery gene
LDO52_RS01165 (LDO52_01165)	pilB	254144..255856 (-)	1713	WP_005094394.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LDO52_RS01170 (LDO52_01170)	tpiA	256134..256925 (+)	792	WP_005094392.1	triose-phosphate isomerase	-
LDO52_RS01175 (LDO52_01175)	secG	256939..257268 (+)	330	WP_005094388.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32071.27 Da Isoelectric Point: 7.8044

                                >NTDB_id=610532 LDO52_RS16380 WP_074383650.1 252023..252883(-) (pilD) [Acinetobacter pseudolwoffii strain XMC5X702]

MQDLIQYFIQNPTALYSAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQMFLHPEQPIIDETKLSLSKPDSTCPKCHQP

IRWYQNIPVISWLVLRGKCGNCQNPISIRYPFIELLTAACALMVVAVFGPTVQMLFGLILTYVLIALTFIDFDTQLLPDR

YTLPLAALGLGVNSYALYTSPSSAIWGYIIGFLCLWVVYYVFKIVTGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSL

VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide

Download Length: 861 bp

                                >NTDB_id=610532 LDO52_RS16380 WP_074383650.1 252023..252883(-) (pilD) [Acinetobacter pseudolwoffii strain XMC5X702]

ATGCAAGATCTTATTCAATATTTCATTCAAAACCCAACAGCGCTGTATAGCGCAGTTGGGCTTTTTAGTCTCTGCATTGG

TAGTTTCTTAAATGTGGTGATTTATCGCACTCCCAAGATGATGGAGCAGGAATGGCGTACCGATTGCCAAATGTTCCTGC

ATCCGGAACAGCCAATTATTGATGAGACCAAATTAAGTTTAAGCAAACCCGATTCGACTTGCCCCAAATGTCATCAGCCA

ATCCGCTGGTACCAGAATATTCCCGTCATCAGCTGGCTGGTCTTGCGCGGCAAGTGCGGCAACTGTCAAAATCCCATTAG

TATCCGCTATCCATTTATTGAGCTTCTGACCGCGGCCTGTGCGCTGATGGTGGTGGCTGTTTTTGGTCCGACTGTCCAGA

TGTTATTTGGCCTGATTCTGACTTATGTCTTAATTGCACTGACCTTTATTGATTTTGACACCCAGTTATTGCCGGACCGT

TATACCCTACCCCTGGCCGCGCTGGGTCTGGGCGTCAATAGTTATGCCCTCTATACCTCACCGAGTTCTGCCATCTGGGG

CTATATCATTGGCTTTCTGTGTTTGTGGGTGGTGTATTATGTCTTTAAAATTGTCACTGGCAAGGAAGGTATGGGCTATG

GCGATTTTAAATTGCTTGCCGCCTTGGGTGCCTGGATGGGGCCTTTGCTATTACCATTAATTGTGCTCCTTTCTTCTTTA

GTGGGTGCGATTATCGGGATTATCCTGCTGAAAGTCCGTAAGGAAAATCAGCCTTTTGCCTTTGGTCCCTATATCGCGAT

TGCCGGCTGGATTGCTTTTCTGTGGGGCGAGCAGATTATGAAAGTGTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A2H9YR93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	82.105	99.65	0.818
pilD	Acinetobacter baumannii D1279779	81.754	99.65	0.815
pilD	Vibrio cholerae strain A1552	55.431	93.357	0.517
pilD	Vibrio campbellii strain DS40M4	52.809	93.357	0.493
pilD	Neisseria gonorrhoeae MS11	48.485	92.308	0.448

Detailed information NTG0610532