Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LCH18_RS15490 Genome accession   NZ_CP083947
Coordinates   3196744..3197970 (+) Length   408 a.a.
NCBI ID   WP_010325767.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain CSUSB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3191744..3202970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH18_RS15445 (LCH18_15445) rimP 3192109..3192633 (-) 525 WP_004692708.1 ribosome maturation factor RimP -
  LCH18_RS15475 (LCH18_15475) secG 3193587..3193916 (-) 330 WP_004692710.1 preprotein translocase subunit SecG -
  LCH18_RS15480 (LCH18_15480) tpiA 3193930..3194721 (-) 792 WP_010325769.1 triose-phosphate isomerase -
  LCH18_RS15485 (LCH18_15485) pilB 3195001..3196713 (+) 1713 WP_183173595.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LCH18_RS15490 (LCH18_15490) pilC 3196744..3197970 (+) 1227 WP_010325767.1 type II secretion system F family protein Machinery gene
  LCH18_RS15495 (LCH18_15495) pilD 3197970..3198830 (+) 861 WP_224467628.1 prepilin peptidase Machinery gene
  LCH18_RS15500 (LCH18_15500) coaE 3198837..3199436 (+) 600 WP_178895931.1 dephospho-CoA kinase -
  LCH18_RS15505 (LCH18_15505) - 3199450..3200367 (-) 918 WP_224467629.1 DMT family transporter -
  LCH18_RS15510 (LCH18_15510) rlmB 3200400..3201149 (-) 750 WP_004692717.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LCH18_RS15515 (LCH18_15515) - 3201293..3201616 (-) 324 WP_004692718.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44814.23 Da        Isoelectric Point: 9.7992

>NTDB_id=608772 LCH18_RS15490 WP_010325767.1 3196744..3197970(+) (pilC) [Acinetobacter johnsonii strain CSUSB1]
MAVKKAQMMPTFNYEGIDRKGAKIKGELPARNLALAKVTLRKQGITIKSIREKKKNILEGILKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVVVVAVIVTIILMVKVVPVFQELFSSFGADLPAFTQMVVNMSEWMQKYWFILIIVVGVVIT
ALLETKKRSKKFRDMLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRATNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTAMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=608772 LCH18_RS15490 WP_010325767.1 3196744..3197970(+) (pilC) [Acinetobacter johnsonii strain CSUSB1]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAATTATGAAGGGATTGATCGTAAAGGGGCAAAAATTAAAGGGGA
ATTGCCTGCACGTAACCTTGCCCTCGCCAAAGTTACTTTGCGCAAACAAGGGATTACCATCAAGAGTATTCGAGAAAAGA
AAAAGAATATTCTTGAAGGCATATTGAAGAAAAAAGTGACCACACTGGACATCACGATTTTCACCCGACAGCTCGCAACC
ATGATGAAAGCGGGTGTACCATTGGTACAAGGCTTTGAAATTGTGGCTGAAGGCTTGGAAAACCCGTCTATGCGTGAAGT
TGTCCTCGGCATTAAAGGTGAAGTTGAGGGTGGTAATACCTTTGCTGGAGCACTCAAAAAATATCCTCAATATTTCGACA
ACTTATTCTGTTCATTGGTTGAATCGGGTGAACAATCAGGTGCGCTTGAGACCATGCTGGATCGTGTGGCAGTCTATAAA
GAAAAAAGTGAGTTGTTAAAGCAAAAAATTAAAAAAGCCATGAAATACCCAGCAACCGTGGTTGTGGTTGCTGTGATCGT
GACTATTATTTTGATGGTCAAAGTTGTCCCTGTTTTCCAAGAACTCTTTAGTTCCTTTGGTGCAGACTTACCTGCATTCA
CCCAAATGGTGGTAAATATGTCTGAATGGATGCAGAAATACTGGTTCATTTTGATTATTGTCGTTGGTGTGGTGATTACC
GCTTTACTCGAAACCAAAAAGCGTAGTAAAAAGTTTCGTGACATGCTAGATAAAGCCGCCCTCAAAGCCCCAATTTTTGG
TGATTTAGTCTATAAAGCGATTATCGCGCGCTATAGCCGCACCCTATCGACAACCTTTGCTGCAGGTGTACCCTTAATTG
ATGCCCTCGAATCTACCGCGGGTGCAACCAACAATGTGGTCTATGAAGAAGCTGTGATGAAGATCCGTGAAGATGTCGCA
ACAGGGCAACAACTTCAATTCGCGATGCGTGCCACCAATAAATTTCCATCAATGGCAGTACAAATGGTAGCGATTGGTGA
AGAATCTGGTGCGCTCGATGCCATGTTGGATAAAGTTGCCACTCACTATGAAAACGAAGTCGATAATGCGGTGGATGGTT
TAACTGCAATGATGGAGCCTCTCATCATGGCAGTCTTGGGTGTACTTGTGGGTGGCCTAGTAATTGCCATGTATTTACCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.725

100

0.887
  pilC Acinetobacter baylyi ADP1

82.108

100

0.821
  pilC Pseudomonas stutzeri DSM 10701

61.481

99.265

0.61
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

46.985

97.549

0.458
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

43.137

100

0.431
  pilC Vibrio campbellii strain DS40M4

41.912

100

0.419
  pilC Thermus thermophilus HB27

37.157

98.284

0.365