NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	LCH18_RS15495	Genome accession	NZ_CP083947
Coordinates	3197970..3198830 (+)	Length	286 a.a.
NCBI ID	WP_224467628.1	Uniprot ID	A0AA42QM73
Organism	Acinetobacter johnsonii strain CSUSB1
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3192970..3203830

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LCH18_RS15475 (LCH18_15475)	secG	3193587..3193916 (-)	330	WP_004692710.1	preprotein translocase subunit SecG	-
LCH18_RS15480 (LCH18_15480)	tpiA	3193930..3194721 (-)	792	WP_010325769.1	triose-phosphate isomerase	-
LCH18_RS15485 (LCH18_15485)	pilB	3195001..3196713 (+)	1713	WP_183173595.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LCH18_RS15490 (LCH18_15490)	pilC	3196744..3197970 (+)	1227	WP_010325767.1	type II secretion system F family protein	Machinery gene
LCH18_RS15495 (LCH18_15495)	pilD	3197970..3198830 (+)	861	WP_224467628.1	prepilin peptidase	Machinery gene
LCH18_RS15500 (LCH18_15500)	coaE	3198837..3199436 (+)	600	WP_178895931.1	dephospho-CoA kinase	-
LCH18_RS15505 (LCH18_15505)	-	3199450..3200367 (-)	918	WP_224467629.1	DMT family transporter	-
LCH18_RS15510 (LCH18_15510)	rlmB	3200400..3201149 (-)	750	WP_004692717.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
LCH18_RS15515 (LCH18_15515)	-	3201293..3201616 (-)	324	WP_004692718.1	pyrimidine/purine nucleoside phosphorylase	-
LCH18_RS15520 (LCH18_15520)	recN	3202009..3203670 (+)	1662	WP_224467631.1	DNA repair protein RecN	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 31970.38 Da Isoelectric Point: 8.0620

                                >NTDB_id=608773 LCH18_RS15495 WP_224467628.1 3197970..3198830(+) (pilD) [Acinetobacter johnsonii strain CSUSB1]

MQEIISYLINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLLLHPEQPIIDETKLTLSKPASTCPKCKSA

IHWYQNIPVMSWFLLRGKCGTCHNPISIRYPAIELLTAICALVVVAVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR

YTLTLAGLGLGVNSYAIYTTPTAAIWGYIIGFLCLWIVYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF

VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGN

Nucleotide

Download Length: 861 bp

                                >NTDB_id=608773 LCH18_RS15495 WP_224467628.1 3197970..3198830(+) (pilD) [Acinetobacter johnsonii strain CSUSB1]

ATGCAAGAAATAATTTCCTATCTTATCAATACTCCAATGGCGCTTTATTTCGCCGTTGGAGTTTTTAGTTTGTGCATTGG

TAGTTTCCTGAATGTAGTGATCTATCGCACGCCAAAAATGATGGAACAAGAATGGCGCACCGACTGCCAACTTCTGCTTC

ATCCTGAGCAGCCAATTATTGATGAAACAAAGCTCACGTTGAGTAAGCCTGCCTCAACCTGTCCAAAATGCAAAAGTGCC

ATACACTGGTATCAAAATATCCCTGTGATGAGTTGGTTCCTGCTACGAGGAAAGTGTGGCACTTGCCATAATCCGATCAG

CATTCGCTACCCTGCGATTGAACTCCTGACCGCCATTTGTGCTTTGGTCGTGGTTGCTGTCTTTGGCCCAACAATCCAAA

TGTTGTTTGGTCTCGTACTCACTTATATTTTAATCGCCTTAACCTTTATTGATTTTGACACTCAACTTTTACCTGATCGC

TATACCCTCACCCTTGCAGGTCTAGGTTTAGGAGTCAATAGTTATGCGATTTACACCACGCCAACAGCGGCCATTTGGGG

CTATATCATTGGCTTTTTATGCTTATGGATCGTGTACTATCTGTTTAAGCTCATCACAGGTAAGGAAGGTATGGGTTATG

GCGACTTTAAGTTACTTGCTGCTTTAGGCGCATGGATGGGCCCTTTGCTGCTGCCGCTGATTGTGCTACTTTCCTCTTTC

GTAGGTGCCATTATCGGCATCATTCTGCTCAAAGTGCGCAAAGAAAATCAGCCTTTTGCTTTTGGCCCGTATATTGCCAT

CGCAGGATGGATTGCCTTTTTGTGGGGTGAGCAAATTATGAAAATATATTTAGGCAATTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	79.298	99.65	0.79
pilD	Acinetobacter nosocomialis M2	79.298	99.65	0.79
pilD	Vibrio cholerae strain A1552	54.104	93.706	0.507
pilD	Vibrio campbellii strain DS40M4	51.685	93.357	0.483
pilD	Neisseria gonorrhoeae MS11	45.788	95.455	0.437

Detailed information NTG0608773