Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LCH18_RS01235 Genome accession   NZ_CP083947
Coordinates   276069..278132 (+) Length   687 a.a.
NCBI ID   WP_224468122.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain CSUSB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 271069..283132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH18_RS01215 (LCH18_01215) pilM 273089..274147 (+) 1059 WP_058870420.1 pilus assembly protein PilM Machinery gene
  LCH18_RS01220 (LCH18_01220) pilN 274147..274803 (+) 657 WP_004691498.1 PilN domain-containing protein Machinery gene
  LCH18_RS01225 (LCH18_01225) pilO 274800..275522 (+) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  LCH18_RS01230 (LCH18_01230) pilP 275522..276049 (+) 528 WP_094148569.1 pilus assembly protein PilP Machinery gene
  LCH18_RS01235 (LCH18_01235) pilQ 276069..278132 (+) 2064 WP_224468122.1 type IV pilus secretin PilQ family protein Machinery gene
  LCH18_RS01240 (LCH18_01240) - 278221..278703 (+) 483 WP_265088291.1 shikimate kinase -
  LCH18_RS01245 (LCH18_01245) aroB 278734..279819 (+) 1086 WP_224468124.1 3-dehydroquinate synthase -
  LCH18_RS01250 (LCH18_01250) - 279827..280666 (+) 840 WP_224468126.1 hypothetical protein -

Sequence

Protein


Download         Length: 687 a.a.        Molecular weight: 74708.64 Da        Isoelectric Point: 5.1326

>NTDB_id=608747 LCH18_RS01235 WP_224468122.1 276069..278132(+) (pilQ) [Acinetobacter johnsonii strain CSUSB1]
MKNSAKDFIFGDGNTMNHMFRQFSMGAIAMAVMQAASAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLV
LDFDKAQQSLKQGSIAVATAEASTVDVTSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSANPALATPVAAARSEQGIS
NIGFQRGSDGEGQVVIDLKGSNTPVDVKQQGSKIVVRVLGNKIPAHLSRRLNVNDFATPVSTIDAQNDGSNGLITIQSNG
SFEYMAYQAEDKLTISLKRPEDKNPMKPKAPSAYTGKKISLDFQDIEVRRVLQLLADFTGINMVASDTVQGNITLRLKDV
PWDQALDIIMKTKNLDKRRNGNVIWIAPVAELIKSEEDEAKAIAQNIKLAPIQTDYIQLSYAKVEDIEKLMTQSKGSNNS
NGVGNDNNDSLLSARGSVTSDKRTNTLILNDTSQNIDKIRRMIDLLDVAVKQVMVEARIVTAQTDFSRELGIRWSAQKLG
NSPVWGGDFQPSFDLGVDLATGTAGTFNFGLLKISDYMLNLELTALQADGHGEVLSAPKVLTGDKQKAYILRGDQIPYQT
WSAETGTTTSFVDANLKLEVTPSITPDGRVQMSLKIEKDTVGALTSAGYLINTNELETNVLVDDGETVVLGGIFDDIKQN
QYEKVPFFGDLPVVGALFKNNTKSSAQTELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2064 bp        

>NTDB_id=608747 LCH18_RS01235 WP_224468122.1 276069..278132(+) (pilQ) [Acinetobacter johnsonii strain CSUSB1]
ATGAAAAATAGTGCTAAAGATTTTATATTTGGGGATGGCAATACGATGAACCATATGTTCCGTCAGTTTTCAATGGGCGC
AATTGCAATGGCGGTGATGCAGGCTGCAAGTGCGCAAGTCAGTATTACGAATATTGTGCCGATGCAAATTCCGGGACAGG
GAACAGAAATTCGTGTCATGTTCAACGGTTTGCCACCACAGCCACAAGCCTATCAGTTGGAACAGCCATCACGTTTGGTT
TTGGATTTTGATAAAGCACAGCAGAGCTTAAAACAAGGCAGTATTGCGGTGGCAACGGCTGAAGCAAGTACAGTTGATGT
AACTTCAGATGCACAGCGTTCACGTTTAACTGTAAATTTGGCTGATGCCGGTGCATTTACTACACGTGTTGAAGGTAATA
CCTTTATTCTGAAAATTAACTCAGCGAACCCAGCGCTAGCAACACCTGTTGCTGCGGCGCGTTCAGAACAAGGCATTTCA
AATATTGGCTTCCAACGCGGTTCAGATGGTGAAGGCCAAGTTGTCATTGATTTAAAAGGTAGCAATACCCCTGTCGATGT
GAAACAGCAAGGCAGTAAAATTGTGGTGCGCGTTTTGGGGAATAAAATTCCTGCCCATTTATCACGCCGTCTCAATGTGA
ATGATTTTGCCACGCCAGTATCGACCATCGATGCACAAAATGATGGTAGTAACGGCCTAATCACGATCCAATCGAATGGC
AGTTTTGAATATATGGCTTATCAGGCAGAAGATAAGCTCACGATTAGTTTAAAGCGTCCTGAAGATAAAAATCCAATGAA
GCCTAAAGCACCAAGTGCTTATACGGGCAAAAAGATTTCTTTAGATTTCCAAGATATTGAAGTGCGACGTGTATTACAGC
TCTTAGCTGATTTTACAGGCATTAACATGGTGGCTTCTGACACCGTACAAGGCAATATTACCTTACGCCTTAAAGATGTT
CCGTGGGATCAAGCACTTGATATCATAATGAAAACCAAGAATTTAGATAAGCGCCGCAATGGTAATGTGATTTGGATTGC
CCCTGTAGCTGAACTGATCAAATCTGAAGAAGATGAAGCGAAGGCGATTGCACAAAATATTAAGCTTGCGCCAATCCAAA
CAGATTATATTCAATTGAGTTATGCAAAAGTAGAGGATATCGAAAAGTTAATGACCCAATCGAAAGGGTCGAATAATTCA
AATGGCGTTGGCAATGATAATAATGATTCATTGCTTAGTGCGAGAGGTTCGGTGACGTCTGATAAGCGTACTAATACGTT
AATTTTAAATGATACATCACAAAATATTGATAAGATCCGCCGGATGATTGACTTGCTGGATGTTGCAGTGAAACAGGTTA
TGGTCGAAGCCCGTATTGTCACGGCACAAACGGATTTCTCTCGTGAACTAGGCATCCGTTGGAGTGCTCAAAAATTGGGG
AATAGTCCAGTTTGGGGGGGGGATTTCCAGCCGAGTTTTGATTTGGGAGTAGATTTAGCAACAGGTACGGCTGGAACGTT
TAACTTTGGTTTATTGAAAATCTCAGATTATATGCTGAATCTTGAGTTAACTGCACTACAAGCAGATGGTCATGGTGAAG
TGTTATCTGCGCCGAAAGTACTCACGGGTGACAAGCAAAAAGCCTATATTTTACGTGGAGATCAAATTCCTTACCAAACT
TGGAGTGCCGAGACAGGGACAACAACCAGTTTTGTTGATGCGAATTTAAAGTTAGAAGTGACTCCAAGTATTACGCCTGA
TGGCCGTGTACAAATGTCGTTGAAAATTGAAAAAGATACTGTTGGCGCACTAACATCTGCAGGGTATTTGATTAATACCA
ATGAACTTGAAACCAATGTTTTGGTGGATGATGGCGAGACGGTTGTATTGGGTGGTATTTTTGATGACATTAAGCAAAAT
CAATATGAGAAAGTTCCCTTTTTTGGGGATTTGCCTGTAGTGGGTGCTTTATTTAAAAATAACACCAAATCTAGTGCGCA
AACTGAGTTATTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(305-348)

AMIN domain (AMIN)

(55-135)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-452)

Bacterial type II and III secretion system protein (Secretin)

(525-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

65.746

100

0.693
  pilQ Acinetobacter baumannii strain A118

65.47

100

0.69
  comQ Acinetobacter baylyi ADP1

62.676

100

0.648
  pilQ Pseudomonas aeruginosa PAK

39.884

100

0.399
  pilQ Legionella pneumophila strain Lp02

37.865

99.563

0.377
  pilQ Legionella pneumophila strain ERS1305867

37.611

98.69

0.371