Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | LCH18_RS01220 | Genome accession | NZ_CP083947 |
| Coordinates | 274147..274803 (+) | Length | 218 a.a. |
| NCBI ID | WP_004691498.1 | Uniprot ID | A0A380U6M1 |
| Organism | Acinetobacter johnsonii strain CSUSB1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 269147..279803
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCH18_RS01205 (LCH18_01205) | - | 269557..270363 (+) | 807 | WP_224468119.1 | putative RNA methyltransferase | - |
| LCH18_RS01210 (LCH18_01210) | ponA | 270395..272923 (-) | 2529 | WP_224468121.1 | penicillin-binding protein PBP1a | - |
| LCH18_RS01215 (LCH18_01215) | pilM | 273089..274147 (+) | 1059 | WP_058870420.1 | pilus assembly protein PilM | Machinery gene |
| LCH18_RS01220 (LCH18_01220) | pilN | 274147..274803 (+) | 657 | WP_004691498.1 | PilN domain-containing protein | Machinery gene |
| LCH18_RS01225 (LCH18_01225) | pilO | 274800..275522 (+) | 723 | WP_004691497.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| LCH18_RS01230 (LCH18_01230) | pilP | 275522..276049 (+) | 528 | WP_094148569.1 | pilus assembly protein PilP | Machinery gene |
| LCH18_RS01235 (LCH18_01235) | pilQ | 276069..278132 (+) | 2064 | WP_224468122.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| LCH18_RS01240 (LCH18_01240) | - | 278221..278703 (+) | 483 | WP_265088291.1 | shikimate kinase | - |
Sequence
Protein
Download Length: 218 a.a. Molecular weight: 24225.67 Da Isoelectric Point: 5.4468
>NTDB_id=608744 LCH18_RS01220 WP_004691498.1 274147..274803(+) (pilN) [Acinetobacter johnsonii strain CSUSB1]
MAKINLLPWRDALREKRKKEFIAYCVGAALVGVLAVALAWFFYSQKLEDQEQANQLVVSTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQGQRPVAVRLVDEMVRVTPSNMYITKFVRTGDKFTIEGKAESPNTVAEFLRNLEASAWYRNAFMNSFLV
AEEKKDKAPSSIVPRVEETYGTFVVTADLDEIAQPVAPNATTPEAASTVNNSTAGAAQ
MAKINLLPWRDALREKRKKEFIAYCVGAALVGVLAVALAWFFYSQKLEDQEQANQLVVSTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQGQRPVAVRLVDEMVRVTPSNMYITKFVRTGDKFTIEGKAESPNTVAEFLRNLEASAWYRNAFMNSFLV
AEEKKDKAPSSIVPRVEETYGTFVVTADLDEIAQPVAPNATTPEAASTVNNSTAGAAQ
Nucleotide
Download Length: 657 bp
>NTDB_id=608744 LCH18_RS01220 WP_004691498.1 274147..274803(+) (pilN) [Acinetobacter johnsonii strain CSUSB1]
ATGGCAAAAATAAACCTACTCCCTTGGCGTGATGCGTTAAGAGAGAAACGAAAAAAAGAATTTATTGCCTATTGTGTTGG
GGCTGCATTAGTTGGGGTTTTAGCTGTTGCTTTGGCTTGGTTCTTTTACAGTCAAAAACTGGAAGATCAAGAACAAGCCA
ATCAGTTGGTGGTGAGTACCAATCAAAACTTAGATGTCCAATTAAAGTCATTGGAAGGTCTGCAAGAGCAGCGCAATGCG
ATTGTTGAACGGATGAAGTTGATCCAAGGTTTGCAAGGTCAACGCCCTGTGGCTGTGCGTTTGGTCGATGAAATGGTACG
TGTTACACCGAGTAATATGTACATTACTAAGTTTGTGCGTACGGGTGATAAATTTACCATTGAAGGTAAAGCGGAAAGCC
CGAATACAGTTGCGGAATTCTTACGAAATCTCGAAGCATCGGCATGGTATCGCAATGCCTTTATGAATTCCTTCTTGGTT
GCTGAAGAGAAAAAAGATAAAGCACCAAGTTCCATCGTGCCACGTGTTGAAGAAACCTATGGCACCTTTGTGGTTACGGC
AGATTTAGATGAGATTGCACAGCCAGTAGCGCCTAATGCGACGACACCTGAAGCCGCAAGTACAGTTAATAATTCAACAG
CGGGGGCAGCACAATGA
ATGGCAAAAATAAACCTACTCCCTTGGCGTGATGCGTTAAGAGAGAAACGAAAAAAAGAATTTATTGCCTATTGTGTTGG
GGCTGCATTAGTTGGGGTTTTAGCTGTTGCTTTGGCTTGGTTCTTTTACAGTCAAAAACTGGAAGATCAAGAACAAGCCA
ATCAGTTGGTGGTGAGTACCAATCAAAACTTAGATGTCCAATTAAAGTCATTGGAAGGTCTGCAAGAGCAGCGCAATGCG
ATTGTTGAACGGATGAAGTTGATCCAAGGTTTGCAAGGTCAACGCCCTGTGGCTGTGCGTTTGGTCGATGAAATGGTACG
TGTTACACCGAGTAATATGTACATTACTAAGTTTGTGCGTACGGGTGATAAATTTACCATTGAAGGTAAAGCGGAAAGCC
CGAATACAGTTGCGGAATTCTTACGAAATCTCGAAGCATCGGCATGGTATCGCAATGCCTTTATGAATTCCTTCTTGGTT
GCTGAAGAGAAAAAAGATAAAGCACCAAGTTCCATCGTGCCACGTGTTGAAGAAACCTATGGCACCTTTGTGGTTACGGC
AGATTTAGATGAGATTGCACAGCCAGTAGCGCCTAATGCGACGACACCTGAAGCCGCAAGTACAGTTAATAATTCAACAG
CGGGGGCAGCACAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Acinetobacter baumannii D1279779 |
69.378 |
95.872 |
0.665 |
| comN | Acinetobacter baylyi ADP1 |
73.604 |
90.367 |
0.665 |