Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NMD24_RS08645 Genome accession   NZ_CP101014
Coordinates   1804619..1806046 (-) Length   475 a.a.
NCBI ID   WP_072132999.1    Uniprot ID   -
Organism   Escherichia coli strain ET5     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1799619..1811046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD24_RS08615 (NMD24_08565) yeeZ 1799674..1800498 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  NMD24_RS08620 (NMD24_08570) yeeY 1800544..1801473 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  NMD24_RS08625 (NMD24_08575) yoeI 1801688..1801750 (+) 63 WP_010723108.1 membrane protein YoeI -
  NMD24_RS08630 (NMD24_08580) plaP 1801740..1803098 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NMD24_RS08635 (NMD24_08585) tsuA 1803277..1804335 (+) 1059 WP_224688892.1 thiosulfate utilization transporter TsuA/YeeE -
  NMD24_RS08640 (NMD24_08590) tsuB 1804349..1804576 (+) 228 WP_000985278.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NMD24_RS08645 (NMD24_08595) sbcB 1804619..1806046 (-) 1428 WP_072132999.1 exodeoxyribonuclease I Machinery gene
  NMD24_RS08650 (NMD24_08600) dacD 1806255..1807421 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NMD24_RS08655 (NMD24_08605) sbmC 1807540..1808013 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  NMD24_RS08660 (NMD24_08610) yeeA 1808211..1809269 (+) 1059 WP_001200890.1 FUSC family protein -
  NMD24_RS08665 (NMD24_08615) tmaR 1809441..1809770 (+) 330 WP_000450409.1 DUF496 family protein -
  NMD24_RS08670 (NMD24_08620) - 1809871..1810053 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  NMD24_RS08675 (NMD24_08625) - 1810116..1810253 (+) 138 Protein_1693 transposase domain-containing protein -
  NMD24_RS08680 (NMD24_08630) - 1810542..1810634 (-) 93 Protein_1694 DUF957 domain-containing protein -
  NMD24_RS08685 (NMD24_08635) yeeW 1810668..1810862 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.76 Da        Isoelectric Point: 5.4720

>NTDB_id=608745 NMD24_RS08645 WP_072132999.1 1804619..1806046(-) (sbcB) [Escherichia coli strain ET5]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=608745 NMD24_RS08645 WP_072132999.1 1804619..1806046(-) (sbcB) [Escherichia coli strain ET5]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581