Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   LCH18_RS01225 Genome accession   NZ_CP083947
Coordinates   274800..275522 (+) Length   240 a.a.
NCBI ID   WP_004691497.1    Uniprot ID   A0A380U8X3
Organism   Acinetobacter johnsonii strain CSUSB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 269800..280522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH18_RS01210 (LCH18_01210) ponA 270395..272923 (-) 2529 WP_224468121.1 penicillin-binding protein PBP1a -
  LCH18_RS01215 (LCH18_01215) pilM 273089..274147 (+) 1059 WP_058870420.1 pilus assembly protein PilM Machinery gene
  LCH18_RS01220 (LCH18_01220) pilN 274147..274803 (+) 657 WP_004691498.1 PilN domain-containing protein Machinery gene
  LCH18_RS01225 (LCH18_01225) pilO 274800..275522 (+) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  LCH18_RS01230 (LCH18_01230) pilP 275522..276049 (+) 528 WP_094148569.1 pilus assembly protein PilP Machinery gene
  LCH18_RS01235 (LCH18_01235) pilQ 276069..278132 (+) 2064 WP_224468122.1 type IV pilus secretin PilQ family protein Machinery gene
  LCH18_RS01240 (LCH18_01240) - 278221..278703 (+) 483 WP_265088291.1 shikimate kinase -
  LCH18_RS01245 (LCH18_01245) aroB 278734..279819 (+) 1086 WP_224468124.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27004.43 Da        Isoelectric Point: 4.9937

>NTDB_id=608745 LCH18_RS01225 WP_004691497.1 274800..275522(+) (pilO) [Acinetobacter johnsonii strain CSUSB1]
MSRDEFEELTSENHAVTKKKMTVDKFFQQFNTLDPNNYGSWPFSVKLTCWIFIILVIGALGYFVVIKPKLDAISNAHAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVSGVNSGLKFKNIRLEPEIRQEFFIEQP
ISIEATGDYHSFGSFVSGIAALPRIVTLHDFDISASSNNEKKTDIPQISYSVKAKTYRYVGATAAASVENTAKADAGGAQ

Nucleotide


Download         Length: 723 bp        

>NTDB_id=608745 LCH18_RS01225 WP_004691497.1 274800..275522(+) (pilO) [Acinetobacter johnsonii strain CSUSB1]
ATGAGTCGCGATGAATTTGAAGAATTAACATCAGAAAACCATGCTGTAACCAAGAAGAAAATGACGGTTGATAAGTTTTT
TCAACAGTTTAATACCTTAGATCCAAACAATTACGGCAGTTGGCCCTTTTCAGTCAAATTGACTTGTTGGATCTTTATCA
TTCTAGTGATTGGGGCATTGGGTTATTTTGTCGTGATTAAGCCGAAGCTTGATGCGATTTCAAATGCACATGCACAAGAA
CAAAATTTACTGAATGAGTTTCGTGAAAAAGATTCAAAATTACGTAACTTGCAGCAATATCAAGCGCAATTGCAAGAAAT
GGAAGCTAATTTCAATCAGCAGTTAGAGCAGTTGCCGAAAGAAACTGAAATTCCTGGTTTGGTTGAAGATATCAACGTGA
GCGGCGTAAATTCTGGATTAAAGTTTAAAAATATTCGTTTAGAGCCAGAAATTCGCCAAGAGTTCTTTATCGAACAGCCG
ATTTCGATAGAAGCGACGGGTGATTATCATTCTTTTGGTTCATTTGTCAGTGGAATTGCAGCTTTGCCGCGTATTGTGAC
CTTGCATGACTTCGATATCTCAGCATCAAGTAATAATGAGAAAAAGACGGATATTCCGCAAATTTCATACAGTGTAAAGG
CTAAAACTTACCGTTATGTCGGGGCGACAGCTGCTGCAAGTGTGGAAAATACAGCTAAAGCAGATGCAGGAGGTGCTCAG
TAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380U8X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.385

99.583

0.721
  comO Acinetobacter baylyi ADP1

67.755

100

0.692