Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LCH18_RS01230 Genome accession   NZ_CP083947
Coordinates   275522..276049 (+) Length   175 a.a.
NCBI ID   WP_094148569.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain CSUSB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 270522..281049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH18_RS01215 (LCH18_01215) pilM 273089..274147 (+) 1059 WP_058870420.1 pilus assembly protein PilM Machinery gene
  LCH18_RS01220 (LCH18_01220) pilN 274147..274803 (+) 657 WP_004691498.1 PilN domain-containing protein Machinery gene
  LCH18_RS01225 (LCH18_01225) pilO 274800..275522 (+) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  LCH18_RS01230 (LCH18_01230) pilP 275522..276049 (+) 528 WP_094148569.1 pilus assembly protein PilP Machinery gene
  LCH18_RS01235 (LCH18_01235) pilQ 276069..278132 (+) 2064 WP_224468122.1 type IV pilus secretin PilQ family protein Machinery gene
  LCH18_RS01240 (LCH18_01240) - 278221..278703 (+) 483 WP_265088291.1 shikimate kinase -
  LCH18_RS01245 (LCH18_01245) aroB 278734..279819 (+) 1086 WP_224468124.1 3-dehydroquinate synthase -
  LCH18_RS01250 (LCH18_01250) - 279827..280666 (+) 840 WP_224468126.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19371.56 Da        Isoelectric Point: 7.1331

>NTDB_id=608746 LCH18_RS01230 WP_094148569.1 275522..276049(+) (pilP) [Acinetobacter johnsonii strain CSUSB1]
MKYQNLMLSLCVGLFLVGCDSRIDAVNMQMAEIRNQPPLPIEPAPDFPPVPTFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNLSRQLQPLESYAIESLNMKGSMRGQNGQILALIQTPDGEIERVQRGSYLGMNHGRVINITATQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=608746 LCH18_RS01230 WP_094148569.1 275522..276049(+) (pilP) [Acinetobacter johnsonii strain CSUSB1]
ATGAAATATCAAAATCTCATGCTTAGTCTCTGCGTAGGACTATTCCTTGTCGGTTGTGATTCACGTATTGATGCGGTCAA
TATGCAAATGGCTGAAATTCGCAATCAGCCACCATTGCCGATTGAACCTGCGCCAGATTTCCCTCCTGTACCGACTTTTA
ATTATGCCGCGCACCAATTAAAGAGCCCGTTTATGCCAAGCTCGTTAGCGGCTGAACTGAAAATTATGGCTGGAAAACGT
GTATATCCAAACCTATCTCGCCAATTACAACCCTTGGAAAGTTATGCGATTGAATCGCTGAACATGAAAGGCAGCATGCG
CGGACAAAATGGACAAATTTTGGCGTTGATTCAAACACCTGATGGTGAAATTGAACGCGTGCAGCGTGGTAGTTATTTGG
GGATGAATCATGGTCGTGTGATTAATATCACCGCCACACAAATTGATTTGATTGAAATTATTCCGGATGGGCGTGAGGGC
TATGTCGAGCGCCCGAGAAGCCTAGTATTAATTGGGCCGGCGCCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(29-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

77.143

100

0.771
  comL Acinetobacter baylyi ADP1

71.429

100

0.714