Detailed information NTG0060804

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: KE3_RS00330
• Genome accession: NC_021900
• Coordinates: 59646..60041 (+)
• Length: 131 a.a.
• NCBI ID: WP_020916006.1
• Uniprot ID: A0AB33AJI7
• Organism: Streptococcus lutetiensis 033
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	60226..62569	59646..60041	flank	185

Gene organization within MGE regions

Location: 59646..62569

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KE3_RS00330 (KE3_0068)	ssbA	59646..60041 (+)	396	WP_020916006.1	single-stranded DNA-binding protein	Machinery gene
KE3_RS10385 (KE3_0069)	-	60226..60303 (+)	78	Protein_62	IS6 family transposase	-
KE3_RS00340 (KE3_0070)	-	60422..61720 (-)	1299	WP_020916007.1	polysaccharide deacetylase family protein	-
KE3_RS00345 (KE3_0071)	-	61889..62569 (+)	681	WP_043894889.1	IS6 family transposase	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14805.80 Da
• Isoelectric Point: 5.2678

>NTDB_id=60804 KE3_RS00330 WP_020916006.1 59646..60041(+) (ssbA) [Streptococcus lutetiensis 033]
MYNKVIMIGRLTAQPELVTTPTEKSVTRVTLAVNRRFKSQNGEREADFISLVVWGSLAETLVSYAGKGSLISVDGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQRAMRENNVANDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=60804 KE3_RS00330 WP_020916006.1 59646..60041(+) (ssbA) [Streptococcus lutetiensis 033]
ATGTATAATAAAGTTATTATGATTGGGCGTTTGACAGCGCAGCCTGAATTGGTGACAACGCCAACCGAAAAATCTGTTAC
ACGTGTAACACTAGCCGTTAACCGTCGTTTTAAATCACAAAATGGTGAGCGTGAAGCGGATTTTATTTCGCTTGTGGTTT
GGGGGAGTTTAGCAGAAACGCTCGTTTCTTATGCTGGAAAAGGGAGTTTGATTTCTGTTGATGGAGAGCTTCGTACGCGT
AAATACGAAAAAGATGGTCACACCAATTATGTGACAGAAGTGCTCTGCCATTCTTTCCAACTTTTAGAAAGTCGTGCCCA
ACGTGCCATGCGAGAAAATAATGTGGCAAACGACCTCGCTGACTTAGTTTTAGAAGAGGAAGAATTGCCGTTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-101)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	80.153	100	0.802
ssbB	Streptococcus sobrinus strain NIDR 6715-7	77.099	100	0.771
ssbB/cilA	Streptococcus pneumoniae Rx1	77.099	100	0.771
ssbB/cilA	Streptococcus pneumoniae D39	77.099	100	0.771
ssbB/cilA	Streptococcus pneumoniae R6	77.099	100	0.771
ssbB/cilA	Streptococcus mitis NCTC 12261	76.336	100	0.763
ssbB/cilA	Streptococcus pneumoniae TIGR4	76.336	100	0.763
ssbB/cilA	Streptococcus mitis SK321	75.573	100	0.756
ssbB	Lactococcus lactis subsp. cremoris KW2	62.281	87.023	0.542
ssbA	Bacillus subtilis subsp. subtilis str. 168	50.943	80.916	0.412
ssb	Latilactobacillus sakei subsp. sakei 23K	45.299	89.313	0.405