Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LA358_RS00225 Genome accession   NZ_CP083612
Coordinates   53779..55020 (+) Length   413 a.a.
NCBI ID   WP_026456598.1    Uniprot ID   -
Organism   Aeromonas enteropelogenes strain FDAARGOS_1536     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 48779..60020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA358_RS00200 (LA358_00200) ampD 49110..49691 (-) 582 WP_224210523.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LA358_RS00205 (LA358_00205) - 49715..50185 (+) 471 WP_224210524.1 TIGR02281 family clan AA aspartic protease -
  LA358_RS00210 (LA358_00210) nadC 50189..51046 (+) 858 WP_224210525.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LA358_RS20080 - 51420..51851 (+) 432 WP_328706056.1 pilin -
  LA358_RS00220 (LA358_00220) pilB 51851..53557 (+) 1707 WP_042025094.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  LA358_RS00225 (LA358_00225) pilC 53779..55020 (+) 1242 WP_026456598.1 type II secretion system F family protein Machinery gene
  LA358_RS00230 (LA358_00230) pilD 55087..55962 (+) 876 WP_224210526.1 prepilin peptidase Machinery gene
  LA358_RS00235 (LA358_00235) coaE 55966..56580 (+) 615 WP_224210527.1 dephospho-CoA kinase -
  LA358_RS00240 (LA358_00240) zapD 56618..57340 (+) 723 WP_224210528.1 cell division protein ZapD -
  LA358_RS00245 (LA358_00245) yacG 57350..57544 (+) 195 WP_026457308.1 DNA gyrase inhibitor YacG -
  LA358_RS00250 (LA358_00250) mutT 57607..58002 (-) 396 WP_224211544.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45329.45 Da        Isoelectric Point: 9.8389

>NTDB_id=606618 LA358_RS00225 WP_026456598.1 53779..55020(+) (pilC) [Aeromonas enteropelogenes strain FDAARGOS_1536]
MATLTNKNNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGIVAADVETGTPMSEALRRHPRYFDALYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVFFGGAA
LAIFLYVRAWRASQKVRDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=606618 LA358_RS00225 WP_026456598.1 53779..55020(+) (pilC) [Aeromonas enteropelogenes strain FDAARGOS_1536]
ATGGCAACGCTAACCAACAAGAATAATGCCCCCAAGAAAGTCTTCGCGTTTCGCTGGAGCGGGGTCAACCGTAAGGGCCA
GAAAGTTTCTGGCGAACTCCAGGCCGACAGCATCAATACCGTCAAGGCCGAGCTGCGCAAGCAGGGGGTCAATGTCACCA
AGGTGGCCAAGAAATCCCAGGGGCTGTTCTCCAAGGGCGGCGCCAAGATCAAACCGATGGATATCGCCATCGTCTCACGC
CAGATCACCACCATGCTCTCCGCTGGCGTACCGCTGGTGCAGAGCCTGCAGATCATCGCCCGCAGCCATGAAAAAGCCTC
GATGCGCGAGCTGATGGGGATCGTCGCCGCCGATGTGGAGACCGGTACCCCCATGTCGGAGGCGCTGCGCCGCCATCCCC
GCTACTTCGACGCCCTCTACTGCGATCTGGTGGAGGCGGGCGAGCAGTCCGGCGCACTGGAGACCATCTACGATCGTATC
GCCACCTATCGGGAAAAGTCAGAAGCGCTCAAGTCCAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATCGTCGTCACCTCCATCCTGCTGCTGTTCGTCATCCCCCAGTTCGAGGACATCTTCAAGAGCTTCGGCGCCGAGC
TGCCCATCTTCACCCAGTTCGTCATCGGCATCTCCCGCTTCATGCAGAACTGGTGGTATGTCTTCTTCGGCGGGGCGGCG
CTCGCCATCTTCCTCTATGTCCGCGCCTGGCGCGCTTCTCAAAAGGTAAGAGACAACACCGACAAGTTTGTGCTGACCAT
CCCGGTGGTCGGCATGATACTGCACAAGGCGGCCATGGCCCGCTTTGCCCGCACCCTCTCCACCACCTTCTCGGCCGGTA
TCCCGCTGGTGGATGCACTCATCTCGGCGGCGGGGGCCTCCGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCGGGCATGCAGATCAACGTGGCGATGCGCACCGTGGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGCGAGGAGTCCGGCGCCATCGATGATATGCTCTCCAAAGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTGGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTACTGGTCGGCGGCATGGTGATCGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGATGTCGTGGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.828

95.884

0.554
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

53.634

96.61

0.518
  pilC Legionella pneumophila strain ERS1305867

50.614

98.547

0.499
  pilC Vibrio cholerae strain A1552

47.118

96.61

0.455
  pilC Vibrio campbellii strain DS40M4

46.734

96.368

0.45
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38.5

96.852

0.373