Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LA358_RS00230 Genome accession   NZ_CP083612
Coordinates   55087..55962 (+) Length   291 a.a.
NCBI ID   WP_224210526.1    Uniprot ID   -
Organism   Aeromonas enteropelogenes strain FDAARGOS_1536     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50087..60962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA358_RS00210 (LA358_00210) nadC 50189..51046 (+) 858 WP_224210525.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LA358_RS20080 - 51420..51851 (+) 432 WP_328706056.1 pilin -
  LA358_RS00220 (LA358_00220) pilB 51851..53557 (+) 1707 WP_042025094.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  LA358_RS00225 (LA358_00225) pilC 53779..55020 (+) 1242 WP_026456598.1 type II secretion system F family protein Machinery gene
  LA358_RS00230 (LA358_00230) pilD 55087..55962 (+) 876 WP_224210526.1 prepilin peptidase Machinery gene
  LA358_RS00235 (LA358_00235) coaE 55966..56580 (+) 615 WP_224210527.1 dephospho-CoA kinase -
  LA358_RS00240 (LA358_00240) zapD 56618..57340 (+) 723 WP_224210528.1 cell division protein ZapD -
  LA358_RS00245 (LA358_00245) yacG 57350..57544 (+) 195 WP_026457308.1 DNA gyrase inhibitor YacG -
  LA358_RS00250 (LA358_00250) mutT 57607..58002 (-) 396 WP_224211544.1 8-oxo-dGTP diphosphatase MutT -
  LA358_RS00255 (LA358_00255) secA 58093..60813 (-) 2721 WP_124238853.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32354.71 Da        Isoelectric Point: 6.8285

>NTDB_id=606619 LA358_RS00230 WP_224210526.1 55087..55962(+) (pilD) [Aeromonas enteropelogenes strain FDAARGOS_1536]
MTLLIELAHGLPWLYLSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYHGYFETQTPNSDPAERYNLMVPRSACPHCGH
AITAVENIPLLSWLWLRGRCRECQAPISARYPLVELLTALLSVAVATILTPGWGVLAALLLTWVLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPIILLLSS
LVGAIIGITLIVLRKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLEMVL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=606619 LA358_RS00230 WP_224210526.1 55087..55962(+) (pilD) [Aeromonas enteropelogenes strain FDAARGOS_1536]
ATGACACTTCTTATCGAGCTGGCGCACGGCTTGCCCTGGCTCTATCTCTCCCTGGTTTTTCTCTTCTCTCTGATGATCGG
CAGCTTCCTCAACGTGGTGATCCACCGCCTCCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCACGGCTACTTCG
AGACACAAACGCCAAACAGCGATCCGGCTGAACGCTACAACCTGATGGTGCCACGTTCCGCCTGCCCCCACTGCGGCCAT
GCCATCACGGCCGTCGAGAATATCCCGCTCCTGAGCTGGCTCTGGCTCAGGGGCCGTTGCCGGGAGTGTCAGGCCCCCAT
CTCGGCCCGTTATCCCCTGGTGGAATTGCTGACAGCCCTGCTCTCGGTAGCGGTAGCCACGATCCTGACGCCGGGCTGGG
GTGTGCTGGCAGCCCTGCTGCTGACCTGGGTGCTGGTGGCGCTCACCTTTATCGATCTGGACAAGATGCTGCTGCCTGAC
CAGCTTACCCTGCCACTGCTGTGGGGCGGGTTGCTGTTCAATCTGGCAGGGGGATTCGTTCCGCTGGCCGACGCGGTGAT
CGGGGCCATGGCCGGCTATCTGGTACTGTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAGGGGATGGGAT
ATGGCGACTTCAAGCTGCTGGCGGCGCTCGGTGCCTGGCTGGGCTGGCAGTCCCTGCCCATCATACTGCTGCTCTCCTCC
CTGGTGGGCGCCATCATCGGCATCACGCTGATCGTGCTGCGCAAGCACCATCAGGGCAAGCCCATTCCCTTTGGCCCCTA
TCTGGCCATCGCGGGCTGGATCGCCCTGCTGTGGGGCGATACCATCACCCGCTGGTATCTCGAAATGGTGCTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(140-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

61.538

98.282

0.605
  pilD Vibrio campbellii strain DS40M4

56.944

98.969

0.564
  pilD Acinetobacter baumannii D1279779

54.122

95.876

0.519
  pilD Acinetobacter nosocomialis M2

54.122

95.876

0.519
  pilD Neisseria gonorrhoeae MS11

49.438

91.753

0.454