Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LAG74_RS01935 Genome accession   NZ_CP083461
Coordinates   396313..397554 (-) Length   413 a.a.
NCBI ID   WP_111899845.1    Uniprot ID   -
Organism   Aeromonas veronii strain SW3814     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 391313..402554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAG74_RS01910 (LAG74_01915) mutT 393305..393709 (+) 405 WP_224969339.1 8-oxo-dGTP diphosphatase MutT -
  LAG74_RS01915 (LAG74_01920) yacG 393787..393981 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  LAG74_RS01920 (LAG74_01925) zapD 393991..394713 (-) 723 WP_005336141.1 cell division protein ZapD -
  LAG74_RS01925 (LAG74_01930) coaE 394751..395365 (-) 615 WP_224969340.1 dephospho-CoA kinase -
  LAG74_RS01930 (LAG74_01935) pilD 395379..396251 (-) 873 WP_224969341.1 A24 family peptidase Machinery gene
  LAG74_RS01935 (LAG74_01940) pilC 396313..397554 (-) 1242 WP_111899845.1 type II secretion system F family protein Machinery gene
  LAG74_RS01940 (LAG74_01945) pilB 397795..399510 (-) 1716 WP_224969342.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  LAG74_RS01945 (LAG74_01950) - 399501..399908 (-) 408 WP_224970155.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LAG74_RS01950 (LAG74_01955) nadC 400235..401110 (-) 876 WP_224969343.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LAG74_RS01955 (LAG74_01960) - 401114..401584 (-) 471 WP_224969344.1 retropepsin-like aspartic protease -
  LAG74_RS01960 (LAG74_01965) ampD 401716..402291 (+) 576 WP_224969345.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45428.53 Da        Isoelectric Point: 9.6071

>NTDB_id=606006 LAG74_RS01935 WP_111899845.1 396313..397554(-) (pilC) [Aeromonas veronii strain SW3814]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQDWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=606006 LAG74_RS01935 WP_111899845.1 396313..397554(-) (pilC) [Aeromonas veronii strain SW3814]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTAAACCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGTATCAACACCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTGGCCAAGAAATCCCAGGGGCTCTTCTCCAAGGGAGGTGCCAAGATCAAACCGATGGATATCGCCATCGTCTCCCGT
CAGATCACCACAATGCTCTCCGCTGGCGTACCACTGGTGCAGAGCCTGCAGATCATCGCCCGCAGTCACGAGAAAGCCTC
GATGCGCGAGCTGATGGGACAGATTGCCGCCGATGTGGAGACCGGAACCCCCATGTCGGAGGCGCTGCGTCGCCATCCCC
TCTACTTTGATGATCTCTACTGCGATCTGGTGGAAGCCGGTGAACAATCCGGTGCGCTGGAGACCATCTACGACCGTATC
GCCACTTATCGGGAAAAGTCGGAAGCGCTCAAGTCGAAGATCAAGAAGGCAATGTTCTATCCCACCATGGTTATTCTGGT
GGCCATCGTGGTGACTTCCATCCTGCTGCTGTTCGTCATCCCCCAGTTCGAGGATATCTTCAAGAGCTTCGGTGCCGAGC
TGCCGGTGTTCACCCAGTTTGTTATCGGCATCTCCCGCTTTATGCAGGATTGGTGGTATGTCTTCTTTGGTGGCACGGCC
CTTGGCATCTTCCTCTATGTGCGGGCCTGGCGGGCCTCCCAGAAGGTGAAAGACAATACCGACAAGTTCGTCCTGACCAT
TCCGGTGGTCGGGATGATCCTGCACAAGGCGGCCATGGCTCGCTTTGCCCGCACCCTGTCGACCACCTTCTCCGCCGGTA
TCCCGCTGGTAGATGCGCTGATTTCGGCGGCTGGGGCCTCTGGTAACTATGTCTATCGCACCGCGGTCATGGCGATCCGC
AACGAGGTGGTGGCCGGTATGCAGATCAACGTGGCGATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGTATGGTTATTGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.645

96.126

0.506
  pilC Legionella pneumophila strain ERS1305867

50.985

98.305

0.501
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.545

97.821

0.446
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368