NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	LAG74_RS01930	Genome accession	NZ_CP083461
Coordinates	395379..396251 (-)	Length	290 a.a.
NCBI ID	WP_224969341.1	Uniprot ID	-
Organism	Aeromonas veronii strain SW3814
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 390379..401251

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LAG74_RS01905 (LAG74_01910)	secA	390510..393230 (+)	2721	WP_224969338.1	preprotein translocase subunit SecA	-
LAG74_RS01910 (LAG74_01915)	mutT	393305..393709 (+)	405	WP_224969339.1	8-oxo-dGTP diphosphatase MutT	-
LAG74_RS01915 (LAG74_01920)	yacG	393787..393981 (-)	195	WP_005336142.1	DNA gyrase inhibitor YacG	-
LAG74_RS01920 (LAG74_01925)	zapD	393991..394713 (-)	723	WP_005336141.1	cell division protein ZapD	-
LAG74_RS01925 (LAG74_01930)	coaE	394751..395365 (-)	615	WP_224969340.1	dephospho-CoA kinase	-
LAG74_RS01930 (LAG74_01935)	pilD	395379..396251 (-)	873	WP_224969341.1	A24 family peptidase	Machinery gene
LAG74_RS01935 (LAG74_01940)	pilC	396313..397554 (-)	1242	WP_111899845.1	type II secretion system F family protein	Machinery gene
LAG74_RS01940 (LAG74_01945)	pilB	397795..399510 (-)	1716	WP_224969342.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
LAG74_RS01945 (LAG74_01950)	-	399501..399908 (-)	408	WP_224970155.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
LAG74_RS01950 (LAG74_01955)	nadC	400235..401110 (-)	876	WP_224969343.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32233.57 Da Isoelectric Point: 6.8283

                                >NTDB_id=606005 LAG74_RS01930 WP_224969341.1 395379..396251(-) (pilD) [Aeromonas veronii strain SW3814]

MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFAPDEEATAPERYNLMVPRSACPHCGHA

ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ

LILPLLWGGLLFNLASGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGREGMGYGDFKLLAALGAWLGWQALPIILLLSSL

IGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

Download Length: 873 bp

                                >NTDB_id=606005 LAG74_RS01930 WP_224969341.1 395379..396251(-) (pilD) [Aeromonas veronii strain SW3814]

ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG

CAGCTTCCTTAACGTGGTCATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCGCAGCTACTTCG

CCCCTGATGAGGAGGCCACTGCGCCAGAGCGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGCCACGCC

ATCACTGCACTGGAGAACATCCCGCTGCTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC

GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTAGCCATGGTCATAACGCCGGGCTGGGGTA

CGTTGGCCGCCCTGTTGCTGACCTGGGTGCTGGTCGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG

CTCATCCTGCCCCTGCTGTGGGGCGGGCTGCTGTTCAACCTGGCAAGTGGCTTCGTGCCGCTGGCGGATGCCGTGATCGG

TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACTGGCAGGGAGGGGATGGGCTATG

GCGACTTCAAGCTGCTAGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCCCTG

ATCGGCGCAGTGATCGGCATCAGCCTGATCGCCTTGCACAAACACCATCAGGGCAAGCCCATTCCCTTCGGCCCCTACCT

CGCCATCGCGGGCTGGATCGCCCTGCTGTGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	59.582	98.966	0.59
pilD	Vibrio campbellii strain DS40M4	54.704	98.966	0.541
pilD	Acinetobacter baumannii D1279779	52.688	96.207	0.507
pilD	Acinetobacter nosocomialis M2	52.688	96.207	0.507
pilD	Neisseria gonorrhoeae MS11	48.352	94.138	0.455

Detailed information NTG0606005