Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LAJ50_RS13760 Genome accession   NZ_CP083376
Coordinates   3081679..3082941 (+) Length   420 a.a.
NCBI ID   WP_138652510.1    Uniprot ID   -
Organism   Pseudoxanthomonas sp. X-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3076679..3087941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAJ50_RS13745 (LAJ50_13735) pilA2 3077465..3077869 (+) 405 WP_138652516.1 pilin Machinery gene
  LAJ50_RS13750 (LAJ50_13740) - 3077978..3079690 (+) 1713 WP_138652514.1 hypothetical protein -
  LAJ50_RS13755 (LAJ50_13745) pilB 3079755..3081479 (+) 1725 WP_138652512.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LAJ50_RS13760 (LAJ50_13750) pilC 3081679..3082941 (+) 1263 WP_138652510.1 type II secretion system F family protein Machinery gene
  LAJ50_RS13765 (LAJ50_13755) - 3082945..3083808 (+) 864 WP_130549744.1 A24 family peptidase -
  LAJ50_RS13770 (LAJ50_13760) - 3084056..3085060 (-) 1005 WP_138652508.1 class I fructose-bisphosphate aldolase -
  LAJ50_RS13775 (LAJ50_13765) pyk 3085131..3086600 (-) 1470 WP_130549746.1 pyruvate kinase -
  LAJ50_RS13780 (LAJ50_13770) - 3086787..3087449 (-) 663 WP_130549747.1 HAD-IA family hydrolase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45443.77 Da        Isoelectric Point: 10.0860

>NTDB_id=605452 LAJ50_RS13760 WP_138652510.1 3081679..3082941(+) (pilC) [Pseudoxanthomonas sp. X-1]
MAVSRSAAKKSVPVARDTKQLAVFVWEGTDKRGVKMKGEQEARNANLLRAELRSKGISPTTLKPKPKPLFGGAGKPIKPS
DIAFFSRQMATMMKSGVPIVTSLEIIGGGHKNPRMKKMLDSLRADIEGGSSLSEAISKFPVQFDELYRNLVRAGEGAGVL
ETVLDTVASYKENIEALKGKIKKALFYPAMTIAVAVLVSAILLIFVVPTFEKVFADFGAELPAFTKMIIAASHIAVDYWW
LAMIVIVGGGIAAVMAFKRSPKFQHFMDRVVLKLPVIGAIMHNSAIARFSRTLAVTFRAGVPLVEALDTIAGATGNTVYE
HAVHRIKDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLYKVAEYYEQEVNNAVDALSSLIEPMIMVVLGIL
VGGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=605452 LAJ50_RS13760 WP_138652510.1 3081679..3082941(+) (pilC) [Pseudoxanthomonas sp. X-1]
ATGGCCGTAAGCCGTTCAGCCGCCAAGAAATCCGTCCCGGTCGCGCGCGATACCAAGCAGCTGGCTGTCTTCGTCTGGGA
AGGCACCGACAAGCGCGGCGTGAAGATGAAGGGCGAGCAGGAGGCTCGCAATGCCAATCTGCTCCGTGCGGAGCTGAGAA
GTAAGGGCATCTCTCCCACTACGCTCAAGCCAAAGCCCAAGCCGCTCTTCGGGGGGGCCGGCAAGCCAATCAAGCCGTCC
GACATCGCTTTTTTCAGCCGCCAGATGGCTACGATGATGAAATCCGGCGTGCCAATTGTGACGTCGTTGGAGATTATTGG
CGGCGGACACAAGAATCCGCGCATGAAGAAGATGTTGGATTCGCTGCGCGCCGATATCGAAGGCGGCTCGTCTCTTTCCG
AGGCGATCAGCAAGTTTCCTGTACAGTTCGACGAGCTGTATCGCAATCTGGTGCGCGCCGGCGAGGGCGCGGGCGTTCTG
GAAACCGTGCTGGACACGGTGGCGAGCTACAAGGAGAACATCGAGGCGTTAAAGGGCAAGATCAAGAAGGCGTTGTTTTA
TCCCGCGATGACCATCGCGGTCGCGGTTCTGGTGAGCGCAATTCTTTTGATCTTCGTTGTGCCCACCTTTGAAAAGGTCT
TCGCCGATTTCGGCGCAGAACTGCCCGCCTTCACAAAGATGATCATCGCCGCCTCGCACATCGCCGTGGACTATTGGTGG
CTGGCGATGATCGTAATCGTCGGCGGCGGCATCGCGGCAGTGATGGCCTTCAAGCGTTCACCCAAGTTCCAACACTTCAT
GGATCGAGTGGTGCTGAAACTACCCGTTATCGGCGCCATCATGCATAACAGCGCGATCGCACGTTTTTCGCGGACGCTAG
CGGTCACTTTCCGTGCTGGCGTTCCTCTGGTGGAAGCGCTCGACACGATCGCTGGCGCAACAGGAAACACGGTGTACGAG
CACGCGGTTCATCGGATCAAGGACGATGTTTCCGTGGGCTACCCGGTCAATATGGCCATGAAGCAAGTCAATCTCTTTCC
TCACATGGTCATCCAGATGACCGCCATTGGCGAGGAGGCGGGAGCGCTCGACACCATGCTGTACAAGGTTGCCGAGTACT
ACGAGCAAGAAGTCAACAACGCCGTGGATGCGCTCAGCAGCCTGATTGAGCCGATGATCATGGTGGTGTTGGGTATCCTT
GTCGGCGGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGGCGCGGTGGTCGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.774

94.762

0.519
  pilC Acinetobacter baylyi ADP1

51.843

96.905

0.502
  pilC Legionella pneumophila strain ERS1305867

50.743

96.19

0.488
  pilC Acinetobacter baumannii D1279779

49.383

96.429

0.476
  pilG Neisseria gonorrhoeae MS11

43.89

95.476

0.419
  pilG Neisseria meningitidis 44/76-A

43.641

95.476

0.417
  pilC Vibrio cholerae strain A1552

40.196

97.143

0.39
  pilC Vibrio campbellii strain DS40M4

39.9

95.476

0.381
  pilC Thermus thermophilus HB27

39.055

95.714

0.374