Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   K9C16_RS01995 Genome accession   NZ_CP082952
Coordinates   427767..428204 (+) Length   145 a.a.
NCBI ID   WP_000993715.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Cl300     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 422767..433204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9C16_RS01975 (K9C16_01980) - 424160..425047 (+) 888 WP_001017320.1 metal-dependent hydrolase -
  K9C16_RS01980 (K9C16_01985) - 425178..425768 (+) 591 WP_000846931.1 LemA family protein -
  K9C16_RS01985 (K9C16_01990) - 425790..426869 (+) 1080 WP_029424118.1 TPM domain-containing protein -
  K9C16_RS01990 (K9C16_01995) - 426863..427423 (+) 561 WP_004839782.1 TPM domain-containing protein -
  K9C16_RS01995 (K9C16_02000) pilA 427767..428204 (+) 438 WP_000993715.1 pilin Machinery gene
  K9C16_RS02000 (K9C16_02005) - 428262..429572 (+) 1311 WP_029424119.1 O-antigen ligase family protein -
  K9C16_RS02005 (K9C16_02010) - 429679..431307 (+) 1629 WP_001195765.1 PglL family O-oligosaccharyltransferase -
  K9C16_RS02010 (K9C16_02015) bfr 431348..431812 (-) 465 WP_000678123.1 bacterioferritin -
  K9C16_RS02015 (K9C16_02020) - 432057..432251 (-) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  K9C16_RS02020 (K9C16_02025) - 432461..432844 (-) 384 WP_000090000.1 RidA family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15022.14 Da        Isoelectric Point: 8.1097

>NTDB_id=603865 K9C16_RS01995 WP_000993715.1 427767..428204(+) (pilA) [Acinetobacter baumannii strain Cl300]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQVSTGLADITAGKTNAETKLAEGLTAALTDVEALGLQKSTNAC
STITTSIGTNGASNITCTLKGTSQINSKKIEWIRDADNATNGTTGAWRCKTDVAENLRPKSCGAS

Nucleotide


Download         Length: 438 bp        

>NTDB_id=603865 K9C16_RS01995 WP_000993715.1 427767..428204(+) (pilA) [Acinetobacter baumannii strain Cl300]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTAGTTGCCATTATTGGTATTTTGGCTGCGATTGCGAT
TCCTGCTTATCAAAACTACATTGCTAAGTCACAAGTAAGTACTGGTTTAGCTGATATTACTGCTGGTAAGACAAACGCAG
AAACTAAATTAGCAGAAGGTTTAACTGCGGCATTAACTGATGTAGAAGCTTTAGGCTTACAAAAATCTACGAATGCTTGT
AGTACTATTACAACCAGTATCGGAACTAATGGTGCAAGTAATATTACTTGTACATTGAAAGGTACATCACAAATTAATAG
TAAAAAAATTGAATGGATCCGTGATGCAGATAATGCTACAAATGGTACGACAGGTGCTTGGCGCTGTAAAACTGATGTAG
CTGAAAACTTACGTCCTAAATCATGTGGTGCTTCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

52.414

100

0.524
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

44.218

100

0.448
  pilA Vibrio cholerae strain A1552

44.218

100

0.448
  pilA Vibrio cholerae C6706

44.218

100

0.448
  pilA Pseudomonas aeruginosa PAK

41.558

100

0.441
  pilA/pilAI Pseudomonas stutzeri DSM 10701

43.357

98.621

0.428
  comP Acinetobacter baylyi ADP1

40

100

0.414
  pilA Haemophilus influenzae 86-028NP

38.816

100

0.407
  pilA/pilAII Pseudomonas stutzeri DSM 10701

40.845

97.931

0.4
  pilA Vibrio parahaemolyticus RIMD 2210633

43.651

86.897

0.379