Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   K8O97_RS11695 Genome accession   NZ_CP082848
Coordinates   2595979..2596392 (-) Length   137 a.a.
NCBI ID   WP_027225147.1    Uniprot ID   -
Organism   Legionella pneumophila strain FDAARGOS_1482     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2590979..2601392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O97_RS11685 (K8O97_11660) letS 2591909..2594641 (+) 2733 WP_027225145.1 two-component system sensor histidine kinase LetS Regulator
  K8O97_RS11690 (K8O97_11665) - 2594738..2595982 (+) 1245 WP_027225146.1 6-phosphofructokinase -
  K8O97_RS11695 (K8O97_11670) pilA2 2595979..2596392 (-) 414 WP_027225147.1 pilin Machinery gene
  K8O97_RS11700 (K8O97_11675) pilA2 2596585..2596995 (-) 411 WP_011214168.1 pilin Machinery gene
  K8O97_RS11705 (K8O97_11680) - 2597298..2597615 (+) 318 WP_027225148.1 BolA family transcriptional regulator -
  K8O97_RS11710 (K8O97_11685) - 2597690..2599111 (+) 1422 WP_027225149.1 APC family permease -
  K8O97_RS11715 (K8O97_11690) - 2599209..2600639 (-) 1431 WP_027225150.1 cellulase family glycosylhydrolase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14475.82 Da        Isoelectric Point: 6.2016

>NTDB_id=602987 K8O97_RS11695 WP_027225147.1 2595979..2596392(-) (pilA2) [Legionella pneumophila strain FDAARGOS_1482]
MRTKGFTLIELMIVAAILGILVAIAIPAYQDYTIRARVVEGLEMASAAKLAVVETSLIDNTLPANQADTGYTSPAPTINV
ASIAIGNQGIITITYTANAGNGTITMVPTLDATNRILTWDCTGGTLISKYRPAYCRP

Nucleotide


Download         Length: 414 bp        

>NTDB_id=602987 K8O97_RS11695 WP_027225147.1 2595979..2596392(-) (pilA2) [Legionella pneumophila strain FDAARGOS_1482]
ATGAGAACGAAAGGATTTACTTTAATCGAGCTGATGATCGTTGCCGCTATACTTGGGATTCTGGTTGCCATCGCAATTCC
AGCCTATCAGGACTATACCATCAGAGCACGGGTGGTTGAAGGATTGGAAATGGCTTCGGCCGCTAAATTAGCTGTTGTTG
AAACGAGTTTAATTGATAACACTTTGCCAGCAAATCAGGCAGATACGGGTTATACCAGTCCAGCCCCAACAATTAATGTG
GCCTCTATAGCCATTGGTAATCAAGGCATTATTACCATTACCTACACTGCAAACGCAGGTAATGGCACTATCACAATGGT
TCCCACCCTGGATGCTACTAACAGAATACTCACTTGGGATTGCACTGGCGGTACCCTGATTAGTAAATATCGTCCAGCCT
ACTGCCGCCCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Pilin (bacterial filament) (Pilin)

(35-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

73.723

100

0.737
  pilA2 Legionella pneumophila strain ERS1305867

72.993

100

0.73
  pilA Ralstonia pseudosolanacearum GMI1000

46.012

100

0.547
  comP Acinetobacter baylyi ADP1

46.207

100

0.489
  pilA/pilA1 Eikenella corrodens VA1

36.184

100

0.401
  pilA/pilAI Pseudomonas stutzeri DSM 10701

37.41

100

0.38
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.41

100

0.38
  pilA Vibrio cholerae strain A1552

34.899

100

0.38
  pilA Vibrio cholerae C6706

34.899

100

0.38
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

34.899

100

0.38