Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | K7G42_RS04005 | Genome accession | NZ_CP082783 |
| Coordinates | 724098..724502 (+) | Length | 134 a.a. |
| NCBI ID | WP_004234432.1 | Uniprot ID | - |
| Organism | Streptococcus parauberis strain KRS02083 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 710442..761027 | 724098..724502 | within | 0 |
Gene organization within MGE regions
Location: 710442..761027
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K7G42_RS03885 (K7G42_03850) | - | 710442..710897 (+) | 456 | WP_003102675.1 | flavodoxin | - |
| K7G42_RS03890 (K7G42_03855) | - | 711004..711291 (+) | 288 | WP_004234472.1 | chorismate mutase | - |
| K7G42_RS03895 (K7G42_03860) | - | 711278..712507 (+) | 1230 | WP_003106446.1 | chloride channel protein | - |
| K7G42_RS03900 (K7G42_03865) | rplS | 712667..713014 (+) | 348 | WP_003102436.1 | 50S ribosomal protein L19 | - |
| K7G42_RS03905 (K7G42_03870) | - | 713695..714375 (+) | 681 | WP_003106447.1 | hypothetical protein | - |
| K7G42_RS03915 (K7G42_03880) | - | 714537..715637 (-) | 1101 | WP_004234471.1 | site-specific integrase | - |
| K7G42_RS03920 (K7G42_03885) | - | 715748..716290 (-) | 543 | WP_004234469.1 | hypothetical protein | - |
| K7G42_RS03925 (K7G42_03890) | - | 716340..716687 (-) | 348 | WP_004234463.1 | ImmA/IrrE family metallo-endopeptidase | - |
| K7G42_RS03930 (K7G42_03895) | - | 716699..717049 (-) | 351 | WP_004234461.1 | helix-turn-helix domain-containing protein | - |
| K7G42_RS03935 (K7G42_03900) | - | 717239..717439 (+) | 201 | WP_004234459.1 | helix-turn-helix transcriptional regulator | - |
| K7G42_RS03940 (K7G42_03905) | - | 717485..718255 (+) | 771 | WP_004234457.1 | phage antirepressor | - |
| K7G42_RS03945 (K7G42_03910) | - | 718410..718622 (-) | 213 | WP_004234455.1 | hypothetical protein | - |
| K7G42_RS03950 (K7G42_03915) | - | 718677..718853 (+) | 177 | WP_004234453.1 | hypothetical protein | - |
| K7G42_RS03955 (K7G42_03920) | - | 718867..719226 (+) | 360 | WP_004234452.1 | hypothetical protein | - |
| K7G42_RS03960 (K7G42_03925) | - | 719304..719525 (+) | 222 | WP_004234450.1 | hypothetical protein | - |
| K7G42_RS03965 (K7G42_03930) | - | 719518..719763 (+) | 246 | WP_004234448.1 | hypothetical protein | - |
| K7G42_RS03970 (K7G42_03935) | - | 719763..720104 (+) | 342 | WP_004234446.1 | helix-turn-helix domain-containing protein | - |
| K7G42_RS03975 (K7G42_03940) | - | 720130..720999 (+) | 870 | WP_004234445.1 | phage replisome organizer N-terminal domain-containing protein | - |
| K7G42_RS03980 (K7G42_03945) | - | 721008..721769 (+) | 762 | WP_004234444.1 | ATP-binding protein | - |
| K7G42_RS03985 (K7G42_03950) | - | 721766..721987 (+) | 222 | WP_004234443.1 | hypothetical protein | - |
| K7G42_RS03990 (K7G42_03955) | - | 722114..722317 (+) | 204 | WP_004234439.1 | hypothetical protein | - |
| K7G42_RS03995 (K7G42_03960) | - | 722472..723293 (+) | 822 | WP_004234437.1 | recombinase RecT | - |
| K7G42_RS04000 (K7G42_03965) | - | 723271..724095 (+) | 825 | WP_037620732.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| K7G42_RS04005 (K7G42_03970) | ssbA | 724098..724502 (+) | 405 | WP_004234432.1 | single-stranded DNA-binding protein | Machinery gene |
| K7G42_RS04010 (K7G42_03975) | - | 724504..724947 (+) | 444 | WP_004234429.1 | RusA family crossover junction endodeoxyribonuclease | - |
| K7G42_RS04015 (K7G42_03980) | - | 724937..725296 (+) | 360 | WP_037620731.1 | hypothetical protein | - |
| K7G42_RS04020 (K7G42_03985) | - | 725293..725535 (+) | 243 | WP_004234423.1 | hypothetical protein | - |
| K7G42_RS04025 (K7G42_03990) | - | 725528..725896 (+) | 369 | WP_004234422.1 | hypothetical protein | - |
| K7G42_RS04030 (K7G42_03995) | - | 725889..726164 (+) | 276 | WP_004234419.1 | nucleotide modification associated domain-containing protein | - |
| K7G42_RS04035 (K7G42_04000) | - | 726157..727374 (+) | 1218 | WP_004234417.1 | hypothetical protein | - |
| K7G42_RS04040 (K7G42_04005) | - | 727459..727662 (+) | 204 | WP_004234415.1 | hypothetical protein | - |
| K7G42_RS04045 (K7G42_04010) | - | 727655..728020 (+) | 366 | WP_004234413.1 | DUF1642 domain-containing protein | - |
| K7G42_RS04050 (K7G42_04015) | - | 728190..728405 (+) | 216 | WP_037620730.1 | hypothetical protein | - |
| K7G42_RS04055 (K7G42_04020) | - | 728433..728849 (+) | 417 | WP_051040025.1 | YopX family protein | - |
| K7G42_RS04060 (K7G42_04025) | - | 728968..729129 (+) | 162 | WP_004234402.1 | hypothetical protein | - |
| K7G42_RS04065 (K7G42_04030) | - | 729126..729392 (+) | 267 | WP_004234400.1 | hypothetical protein | - |
| K7G42_RS04070 (K7G42_04035) | - | 729396..730121 (+) | 726 | WP_004234398.1 | hypothetical protein | - |
| K7G42_RS04075 (K7G42_04040) | - | 730305..730940 (+) | 636 | WP_004234393.1 | N-6 DNA methylase | - |
| K7G42_RS04080 (K7G42_04045) | - | 730944..731183 (+) | 240 | WP_037620727.1 | hypothetical protein | - |
| K7G42_RS04085 (K7G42_04050) | - | 731173..731703 (+) | 531 | WP_004234390.1 | DUF1642 domain-containing protein | - |
| K7G42_RS04090 (K7G42_04055) | - | 731700..731921 (+) | 222 | WP_004234387.1 | hypothetical protein | - |
| K7G42_RS04095 (K7G42_04060) | - | 732194..732607 (+) | 414 | WP_004234380.1 | phage transcriptional activator | - |
| K7G42_RS04100 (K7G42_04065) | - | 732886..733059 (+) | 174 | WP_004234378.1 | hypothetical protein | - |
| K7G42_RS04105 (K7G42_04070) | - | 733185..733343 (+) | 159 | WP_192813184.1 | hypothetical protein | - |
| K7G42_RS04110 (K7G42_04075) | - | 733405..733743 (+) | 339 | WP_037620753.1 | HNH endonuclease | - |
| K7G42_RS04115 (K7G42_04080) | - | 733904..734374 (+) | 471 | WP_004234374.1 | phage terminase small subunit P27 family | - |
| K7G42_RS04120 (K7G42_04085) | - | 734395..736095 (+) | 1701 | WP_004234372.1 | terminase large subunit | - |
| K7G42_RS04125 (K7G42_04090) | - | 736258..736530 (+) | 273 | WP_004234370.1 | hypothetical protein | - |
| K7G42_RS04130 (K7G42_04095) | - | 736583..737797 (+) | 1215 | WP_004234368.1 | phage portal protein | - |
| K7G42_RS04135 (K7G42_04100) | - | 737775..738437 (+) | 663 | WP_037620751.1 | head maturation protease, ClpP-related | - |
| K7G42_RS04140 (K7G42_04105) | - | 738475..739641 (+) | 1167 | WP_004234366.1 | phage major capsid protein | - |
| K7G42_RS04145 | - | 739664..739774 (+) | 111 | Protein_766 | 30S ribosomal protein S16 | - |
| K7G42_RS04150 (K7G42_04110) | - | 739785..740099 (+) | 315 | WP_004234365.1 | head-tail connector protein | - |
| K7G42_RS04155 (K7G42_04115) | - | 740096..740431 (+) | 336 | WP_004234364.1 | phage head closure protein | - |
| K7G42_RS04160 (K7G42_04120) | - | 740428..740802 (+) | 375 | WP_004234363.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| K7G42_RS04165 (K7G42_04125) | - | 740799..741224 (+) | 426 | WP_004234362.1 | hypothetical protein | - |
| K7G42_RS04170 (K7G42_04130) | - | 741245..741811 (+) | 567 | WP_004234361.1 | major tail protein | - |
| K7G42_RS04175 (K7G42_04135) | gpG | 741865..742188 (+) | 324 | WP_004234360.1 | phage tail assembly chaperone G | - |
| K7G42_RS04180 (K7G42_04140) | - | 742236..742388 (+) | 153 | WP_317141482.1 | hypothetical protein | - |
| K7G42_RS04185 (K7G42_04145) | - | 742402..746430 (+) | 4029 | WP_004234358.1 | phage tail tape measure protein | - |
| K7G42_RS04190 (K7G42_04150) | - | 746431..747897 (+) | 1467 | WP_004234357.1 | distal tail protein Dit | - |
| K7G42_RS04195 | - | 747901..752487 (+) | 4587 | WP_004234356.1 | phage tail protein | - |
| K7G42_RS04200 (K7G42_04165) | - | 752498..754324 (+) | 1827 | WP_004234354.1 | DUF859 family phage minor structural protein | - |
| K7G42_RS04205 (K7G42_04170) | - | 754339..754662 (+) | 324 | WP_004234353.1 | DUF1366 domain-containing protein | - |
| K7G42_RS04210 | - | 754701..754829 (+) | 129 | WP_004234351.1 | hypothetical protein | - |
| K7G42_RS04215 (K7G42_04175) | - | 754834..755142 (+) | 309 | WP_037620722.1 | hypothetical protein | - |
| K7G42_RS04220 (K7G42_04180) | - | 755144..755422 (+) | 279 | WP_004234347.1 | phage holin | - |
| K7G42_RS04225 (K7G42_04185) | - | 755426..756682 (+) | 1257 | WP_004234346.1 | peptidoglycan recognition family protein | - |
| K7G42_RS04230 (K7G42_04190) | - | 756734..756985 (+) | 252 | WP_037620720.1 | DUF5960 family protein | - |
| K7G42_RS04235 (K7G42_04195) | - | 757213..758427 (+) | 1215 | WP_004234345.1 | FtsW/RodA/SpoVE family cell cycle protein | - |
| K7G42_RS04240 (K7G42_04200) | - | 758514..759074 (+) | 561 | WP_004234344.1 | HAD-IA family hydrolase | - |
| K7G42_RS04245 (K7G42_04205) | gyrB | 759075..761027 (+) | 1953 | WP_004234342.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 14875.60 Da Isoelectric Point: 9.4649
>NTDB_id=602203 K7G42_RS04005 WP_004234432.1 724098..724502(+) (ssbA) [Streptococcus parauberis strain KRS02083]
MNNVSLVGRLTKDVELKHTNSQTAVTTGTLAVNRQFKNANGEKEVDFINFVAWRKTAEIIANYASKGSQIGITGRIQTRN
YEGNDGKRVYVTEVVAESVALLDSKSNNQQPQQKKETPFNNSNPMDVSNLDLPF
MNNVSLVGRLTKDVELKHTNSQTAVTTGTLAVNRQFKNANGEKEVDFINFVAWRKTAEIIANYASKGSQIGITGRIQTRN
YEGNDGKRVYVTEVVAESVALLDSKSNNQQPQQKKETPFNNSNPMDVSNLDLPF
Nucleotide
Download Length: 405 bp
>NTDB_id=602203 K7G42_RS04005 WP_004234432.1 724098..724502(+) (ssbA) [Streptococcus parauberis strain KRS02083]
ATGAATAACGTAAGTTTAGTAGGTCGATTAACAAAAGATGTTGAACTTAAACACACCAACTCGCAAACCGCAGTAACAAC
AGGAACGCTTGCTGTCAATCGTCAATTCAAAAATGCAAACGGAGAAAAAGAAGTTGACTTTATTAACTTTGTGGCTTGGA
GAAAGACAGCTGAAATTATCGCAAATTACGCTTCTAAAGGTTCACAAATTGGAATCACTGGGCGTATTCAAACACGAAAC
TATGAAGGTAATGATGGAAAACGTGTATATGTGACTGAGGTTGTAGCGGAATCTGTAGCATTACTTGATAGCAAGTCAAA
TAATCAACAACCCCAACAAAAGAAAGAAACACCATTTAACAATAGTAATCCAATGGACGTTTCAAATTTGGATTTGCCTT
TCTGA
ATGAATAACGTAAGTTTAGTAGGTCGATTAACAAAAGATGTTGAACTTAAACACACCAACTCGCAAACCGCAGTAACAAC
AGGAACGCTTGCTGTCAATCGTCAATTCAAAAATGCAAACGGAGAAAAAGAAGTTGACTTTATTAACTTTGTGGCTTGGA
GAAAGACAGCTGAAATTATCGCAAATTACGCTTCTAAAGGTTCACAAATTGGAATCACTGGGCGTATTCAAACACGAAAC
TATGAAGGTAATGATGGAAAACGTGTATATGTGACTGAGGTTGTAGCGGAATCTGTAGCATTACTTGATAGCAAGTCAAA
TAATCAACAACCCCAACAAAAGAAAGAAACACCATTTAACAATAGTAATCCAATGGACGTTTCAAATTTGGATTTGCCTT
TCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
45.029 |
100 |
0.575 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
44.97 |
100 |
0.567 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
54.386 |
85.075 |
0.463 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.029 |
100 |
0.433 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.58 |
100 |
0.418 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
40.58 |
100 |
0.418 |
| ssbA | Streptococcus mutans UA159 |
42.105 |
99.254 |
0.418 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
39.855 |
100 |
0.41 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
39.855 |
100 |
0.41 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
39.855 |
100 |
0.41 |
| ssbB/cilA | Streptococcus mitis SK321 |
39.855 |
100 |
0.41 |