Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K6I41_RS17440 Genome accession   NZ_CP082274
Coordinates   3685033..3686259 (+) Length   408 a.a.
NCBI ID   WP_049837982.1    Uniprot ID   -
Organism   Acinetobacter sp. AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3680033..3691259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS17405 (K6I41_17290) rimP 3680701..3681228 (-) 528 WP_004795010.1 ribosome maturation factor RimP -
  K6I41_RS17425 (K6I41_17310) secG 3681865..3682194 (-) 330 WP_004795012.1 preprotein translocase subunit SecG -
  K6I41_RS17430 (K6I41_17315) tpiA 3682207..3683001 (-) 795 WP_250374853.1 triose-phosphate isomerase -
  K6I41_RS17435 (K6I41_17320) pilB 3683293..3685005 (+) 1713 WP_005301829.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K6I41_RS17440 (K6I41_17325) pilC 3685033..3686259 (+) 1227 WP_049837982.1 type II secretion system F family protein Machinery gene
  K6I41_RS19175 (K6I41_17330) pilD 3686259..3687119 (+) 861 WP_284453895.1 A24 family peptidase Machinery gene
  K6I41_RS17455 (K6I41_17335) coaE 3687121..3687717 (+) 597 WP_049837984.1 dephospho-CoA kinase -
  K6I41_RS17460 (K6I41_17340) - 3687714..3688628 (-) 915 WP_250374854.1 DMT family transporter -
  K6I41_RS17465 (K6I41_17345) rlmB 3688664..3689413 (-) 750 WP_004795029.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  K6I41_RS17470 (K6I41_17350) - 3689516..3689842 (-) 327 WP_004795031.1 pyrimidine/purine nucleoside phosphorylase -
  K6I41_RS17475 (K6I41_17355) - 3689919..3691229 (-) 1311 WP_250374855.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44990.44 Da        Isoelectric Point: 9.9566

>NTDB_id=600775 K6I41_RS17440 WP_049837982.1 3685033..3686259(+) (pilC) [Acinetobacter sp. AS23]
MTVKKAQLMPTFAYDGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDKLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFILIIVIGAIIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=600775 K6I41_RS17440 WP_049837982.1 3685033..3686259(+) (pilC) [Acinetobacter sp. AS23]
ATGACTGTCAAAAAGGCACAATTGATGCCGACTTTTGCTTATGATGGGGTTGACCGTAAAGGTGTAAAAATTAAGGGGGA
ACTTCCGGCTAAAAATATGGCTTTAGCCAAAGTCACCCTACGCAAGCAAGGTGTAACTGTTCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAAGGTTTATTTAAGAAAAAAGTATCAACGCTCGATATCACGATTTTCACGCGACAACTTGCAACT
ATGATGAAAGCTGGTGTCCCACTGGTACAAGGCTTTGAAATTGTGGCAGAAGGTCTAGAAAACCCAGCTATGCGCGAGGT
GGTACTGGGTATTAAAGGTGAAGTTGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAGTATCCTCAGCACTTCGACA
AACTGTTTTGCTCTCTTGTAGAGTCTGGCGAACAGTCTGGTGCGCTTGAAACCATGCTGGACCGCGTGGCAATTTACAAA
GAAAAGAGTGAATTGCTTAAGCAGAAAATTAAGAAAGCTATGAAATATCCAGCAACGGTTATTGTGGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCCGTCTTCCAAGATCTGTTTTCTTCCTTTGGCGCAGATCTACCTGCTTTTA
CACAAATGGTCGTAAATATGTCGAAATGGATGCAGGAATACTGGTTCATTCTGATTATTGTGATCGGTGCAATCATTGCC
GCATTTTTGGAAGCTAAAAAGCGCAGTAAAAAATTCCGTGATGGTTTAGACAAACTTACCCTGAAACTACCTATCTTTGG
TGATCTGGTTTATAAGGCGATTATTGCCCGTTACAGCCGTACTTTAGCAACAACTTTTGCAGCTGGTGTTCCTCTCATCG
ATGCGCTTGAATCAACGGCTGGTGCAACCAACAATGTCATTTACGAACAAGCCGTCATGAAAATTCGTGAAGATGTTGCA
ACAGGACAACAACTCCAATTTGCGATGCGCGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGTATGCTCGATAAAGTTGCAACGTACTATGAGAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATTATGGCAATTTTAGGGGTACTTGTAGGCGGTCTGGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

96.814

100

0.968
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

60.202

97.304

0.586
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria meningitidis 44/76-A

45.98

97.549

0.449
  pilG Neisseria gonorrhoeae MS11

45.98

97.549

0.449
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

37.157

98.284

0.365