Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   K6I41_RS19175 Genome accession   NZ_CP082274
Coordinates   3686259..3687119 (+) Length   286 a.a.
NCBI ID   WP_284453895.1    Uniprot ID   -
Organism   Acinetobacter sp. AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3681259..3692119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS17425 (K6I41_17310) secG 3681865..3682194 (-) 330 WP_004795012.1 preprotein translocase subunit SecG -
  K6I41_RS17430 (K6I41_17315) tpiA 3682207..3683001 (-) 795 WP_250374853.1 triose-phosphate isomerase -
  K6I41_RS17435 (K6I41_17320) pilB 3683293..3685005 (+) 1713 WP_005301829.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K6I41_RS17440 (K6I41_17325) pilC 3685033..3686259 (+) 1227 WP_049837982.1 type II secretion system F family protein Machinery gene
  K6I41_RS19175 (K6I41_17330) pilD 3686259..3687119 (+) 861 WP_284453895.1 A24 family peptidase Machinery gene
  K6I41_RS17455 (K6I41_17335) coaE 3687121..3687717 (+) 597 WP_049837984.1 dephospho-CoA kinase -
  K6I41_RS17460 (K6I41_17340) - 3687714..3688628 (-) 915 WP_250374854.1 DMT family transporter -
  K6I41_RS17465 (K6I41_17345) rlmB 3688664..3689413 (-) 750 WP_004795029.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  K6I41_RS17470 (K6I41_17350) - 3689516..3689842 (-) 327 WP_004795031.1 pyrimidine/purine nucleoside phosphorylase -
  K6I41_RS17475 (K6I41_17355) - 3689919..3691229 (-) 1311 WP_250374855.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32112.48 Da        Isoelectric Point: 6.4577

>NTDB_id=600785 K6I41_RS19175 WP_284453895.1 3686259..3687119(+) (pilD) [Acinetobacter sp. AS23]
MQEIIAYFIQNLTALYITVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLDPEQPIIDHEKLTLSKPASSCPECHQP
IRWYQNIPVISWLVLKGKCGHCQHPISIRYPAIELLTMACSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=600785 K6I41_RS19175 WP_284453895.1 3686259..3687119(+) (pilD) [Acinetobacter sp. AS23]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTACAGTTGCATTATTGAGCCTATGTATTGG
TAGCTTTCTGAATGTGGTGATTTATCGCACCCCAAAAATGATGGAACAAGATTGGCAACAAGAATGTCAAATGCTACTCG
ACCCTGAACAACCAATCATTGATCATGAAAAACTGACATTAAGCAAGCCTGCCTCATCATGTCCAGAGTGCCATCAGCCC
ATCCGTTGGTATCAAAATATTCCTGTCATTAGTTGGTTGGTTTTAAAAGGTAAATGTGGCCATTGCCAGCATCCAATCAG
TATTCGCTATCCAGCGATTGAACTATTAACAATGGCATGTTCACTGGTTGTGGTCATGGTGTTTGGTCCAACCATTCAAA
TGCTTTTCGGGCTAGTCCTGACTTGGGTCCTGATTGCCCTCACCTTTATAGACTTTGATACTCAGCTGCTACCTGACCGT
TTCACCCTACCTTTAGCTGCGCTTGGTTTGGGCATTAACACCTTTAATATTTACACCTCACCTAACTCAGCCATTTGGGG
TTACCTGATTGGTTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGCATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGTTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTATTAAAATTACGCAATGACAATCAGCCCTTTGCCTTTGGGCCCTACATTGCCAT
TGCAGGTTGGGTTGCCTTTCTATGGGGTGACCAGATTATGAAAATCTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

96.853

100

0.969
  pilD Acinetobacter baumannii D1279779

96.503

100

0.965
  pilD Vibrio cholerae strain A1552

52.941

95.105

0.503
  pilD Vibrio campbellii strain DS40M4

52.399

94.755

0.497
  pilD Neisseria gonorrhoeae MS11

47.348

92.308

0.437