Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   K6973_RS00880 Genome accession   NZ_CP082206
Coordinates   141189..141584 (+) Length   131 a.a.
NCBI ID   WP_138124444.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 136189..146584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS00850 (K6973_00850) proC 136550..137377 (-) 828 WP_256867161.1 pyrroline-5-carboxylate reductase -
  K6973_RS00855 (K6973_00855) pepA 137373..138440 (-) 1068 WP_192942726.1 glutamyl aminopeptidase -
  K6973_RS00860 (K6973_00860) - 138998..139282 (+) 285 WP_172595967.1 DUF4651 domain-containing protein -
  K6973_RS00865 (K6973_00865) - 139279..139596 (+) 318 WP_143927083.1 thioredoxin family protein -
  K6973_RS00870 (K6973_00870) ytpR 139615..140241 (+) 627 WP_192942727.1 YtpR family tRNA-binding protein -
  K6973_RS00875 (K6973_00875) - 140382..141110 (-) 729 WP_218655376.1 class I SAM-dependent methyltransferase -
  K6973_RS00880 (K6973_00880) ssbA 141189..141584 (+) 396 WP_138124444.1 single-stranded DNA-binding protein Machinery gene
  K6973_RS00885 (K6973_00885) - 142094..143056 (+) 963 WP_192942730.1 ABC transporter substrate-binding protein -
  K6973_RS00890 (K6973_00890) - 143086..144045 (+) 960 WP_218655019.1 ABC transporter substrate-binding protein -
  K6973_RS00895 (K6973_00895) - 144284..145054 (-) 771 WP_343237784.1 transposase -
  K6973_RS11400 - 145070..145486 (-) 417 WP_343237785.1 IS110 family transposase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14860.07 Da        Isoelectric Point: 7.1671

>NTDB_id=600080 K6973_RS00880 WP_138124444.1 141189..141584(+) (ssbA) [Streptococcus dysgalactiae strain DY107]
MYNKVIAIGRLVAKPELVKTATDKHVARLFLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVANDLVDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=600080 K6973_RS00880 WP_138124444.1 141189..141584(+) (ssbA) [Streptococcus dysgalactiae strain DY107]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTGGCCAAACCAGAATTGGTAAAAACCGCTACGGATAAGCATGTAGC
ACGTCTCTTTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCAGGAGAGCGAGAAGCAGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCAGAAACCTTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGACGGTGAACTTAGAACCCGT
AAATATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTGCTATGTCAGTCTTTTCAGTTATTAGAAAGTCGTGCTCA
GCGTGCGATGCGAGAAAATAATGTCGCCAATGACTTGGTAGATTTGGTTCTAGAAGAGGAGGAGTTGCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.809

100

0.748
  ssbB/cilA Streptococcus pneumoniae D39

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

45.299

89.313

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397