Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   K6973_RS00800 Genome accession   NZ_CP082206
Coordinates   130635..130961 (+) Length   108 a.a.
NCBI ID   WP_138124408.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 125635..135961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS00785 (K6973_00785) - 128255..128620 (+) 366 WP_218655016.1 DUF1033 family protein -
  K6973_RS00790 (K6973_00790) comYA 128725..129666 (+) 942 WP_138124405.1 competence type IV pilus ATPase ComGA Machinery gene
  K6973_RS00795 (K6973_00795) comYB 129602..130633 (+) 1032 WP_138126921.1 competence type IV pilus assembly protein ComGB Machinery gene
  K6973_RS00800 (K6973_00800) comYC 130635..130961 (+) 327 WP_138124408.1 competence type IV pilus major pilin ComGC Machinery gene
  K6973_RS00805 (K6973_00805) comGD 130936..131364 (+) 429 WP_256867133.1 competence type IV pilus minor pilin ComGD -
  K6973_RS00810 (K6973_00810) comGE 131372..131617 (+) 246 WP_242002881.1 competence type IV pilus minor pilin ComGE -
  K6973_RS00815 (K6973_00815) comGF 131598..132038 (+) 441 WP_138124417.1 competence type IV pilus minor pilin ComGF -
  K6973_RS00820 (K6973_00820) comGG 132067..132390 (+) 324 WP_256867134.1 competence type IV pilus minor pilin ComGG -
  K6973_RS00825 (K6973_00825) comYH 132453..133406 (+) 954 WP_138124423.1 class I SAM-dependent methyltransferase Machinery gene
  K6973_RS00830 (K6973_00830) - 133465..134661 (+) 1197 WP_084916957.1 acetate kinase -
  K6973_RS00835 (K6973_00835) - 134967..135173 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  K6973_RS00840 (K6973_00840) - 135276..135956 (+) 681 WP_218655018.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12453.44 Da        Isoelectric Point: 9.2972

>NTDB_id=600077 K6973_RS00800 WP_138124408.1 130635..130961(+) (comYC) [Streptococcus dysgalactiae strain DY107]
MKNQWKPLRQYQLQAFTLLEMLLVILVISILMLLFVPNLSKQKDRVTETGNAAVVKLVENQAELYELSQGSKPSLQQLKD
DGSITDKQVKAYTDYYGKHRDETQKLQP

Nucleotide


Download         Length: 327 bp        

>NTDB_id=600077 K6973_RS00800 WP_138124408.1 130635..130961(+) (comYC) [Streptococcus dysgalactiae strain DY107]
ATGAAGAACCAATGGAAACCATTACGGCAATACCAACTACAAGCTTTCACACTTCTAGAAATGTTACTGGTGATTTTAGT
CATCAGTATCTTAATGCTCTTATTTGTACCTAATTTAAGCAAACAAAAAGATAGGGTTACCGAAACAGGAAATGCTGCTG
TTGTCAAATTAGTGGAGAATCAAGCAGAGTTGTACGAATTATCGCAAGGATCAAAGCCAAGTTTACAACAGTTGAAAGAC
GATGGCAGTATTACAGATAAACAGGTAAAAGCTTACACAGACTATTATGGAAAACACAGAGATGAGACTCAAAAACTGCA
ACCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

57.143

97.222

0.556
  comGC Lactococcus lactis subsp. cremoris KW2

54.369

95.37

0.519
  comGC/cglC Streptococcus mitis SK321

51.887

98.148

0.509
  comGC/cglC Streptococcus pneumoniae TIGR4

50.467

99.074

0.5
  comYC Streptococcus mutans UA159

53.465

93.519

0.5
  comYC Streptococcus mutans UA140

53.465

93.519

0.5
  comGC/cglC Streptococcus pneumoniae D39

50.943

98.148

0.5
  comGC/cglC Streptococcus pneumoniae R6

50.943

98.148

0.5
  comGC/cglC Streptococcus pneumoniae Rx1

50.943

98.148

0.5
  comGC/cglC Streptococcus mitis NCTC 12261

54.082

90.741

0.491
  comYC Streptococcus suis isolate S10

50.562

82.407

0.417