Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   K6973_RS00795 Genome accession   NZ_CP082206
Coordinates   129602..130633 (+) Length   343 a.a.
NCBI ID   WP_138126921.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 124602..135633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS00785 (K6973_00785) - 128255..128620 (+) 366 WP_218655016.1 DUF1033 family protein -
  K6973_RS00790 (K6973_00790) comYA 128725..129666 (+) 942 WP_138124405.1 competence type IV pilus ATPase ComGA Machinery gene
  K6973_RS00795 (K6973_00795) comYB 129602..130633 (+) 1032 WP_138126921.1 competence type IV pilus assembly protein ComGB Machinery gene
  K6973_RS00800 (K6973_00800) comYC 130635..130961 (+) 327 WP_138124408.1 competence type IV pilus major pilin ComGC Machinery gene
  K6973_RS00805 (K6973_00805) comGD 130936..131364 (+) 429 WP_256867133.1 competence type IV pilus minor pilin ComGD -
  K6973_RS00810 (K6973_00810) comGE 131372..131617 (+) 246 WP_242002881.1 competence type IV pilus minor pilin ComGE -
  K6973_RS00815 (K6973_00815) comGF 131598..132038 (+) 441 WP_138124417.1 competence type IV pilus minor pilin ComGF -
  K6973_RS00820 (K6973_00820) comGG 132067..132390 (+) 324 WP_256867134.1 competence type IV pilus minor pilin ComGG -
  K6973_RS00825 (K6973_00825) comYH 132453..133406 (+) 954 WP_138124423.1 class I SAM-dependent methyltransferase Machinery gene
  K6973_RS00830 (K6973_00830) - 133465..134661 (+) 1197 WP_084916957.1 acetate kinase -
  K6973_RS00835 (K6973_00835) - 134967..135173 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 38971.37 Da        Isoelectric Point: 9.2055

>NTDB_id=600076 K6973_RS00795 WP_138126921.1 129602..130633(+) (comYB) [Streptococcus dysgalactiae strain DY107]
MTFLQRDISVRSKQGLKKLSSKEQYKLIQLLANLLLTGFNLTEIIAFLTKSHLIPEPYVLRMEEALLKGRGLADMLAGLG
FSDAILTQISLADGHGNIETTLVNIQGYLNQMAKLKRKTIEVVTYPIILLVFLFVMMLGLRHYVMPQLEAQNQLTIFLTH
FPAIFFGIILFIGVLLGGIWLHWRSQSRLKLFTHFSAYPVLGKLLQQYLTAYYAREWGTLIGQGLELPVILDIMAMEKSL
FMQELAEDIRVSLLAGQAFHDKVATYPFFKKELSLMITYGEIKSKLGSELEIYAQESWAQFFSQLHQATQFIQPIIFLVI
ALTIVMIYAAILLPIYQNMGGVL

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=600076 K6973_RS00795 WP_138126921.1 129602..130633(+) (comYB) [Streptococcus dysgalactiae strain DY107]
ATGACCTTCTTGCAGCGGGATATCTCAGTCCGGAGCAAGCAAGGCTTGAAAAAATTATCCAGTAAGGAACAATACAAACT
AATTCAGCTATTAGCTAACCTTTTGTTAACAGGATTTAACCTGACTGAGATAATAGCTTTCTTAACAAAAAGTCATTTGA
TTCCCGAGCCCTATGTTCTCCGCATGGAAGAAGCACTCTTAAAAGGTCGAGGGCTGGCAGATATGTTAGCTGGGCTAGGT
TTTTCGGATGCTATTTTAACTCAAATTAGTTTAGCAGATGGTCACGGAAACATTGAGACGACGCTTGTTAATATTCAGGG
CTATCTCAACCAAATGGCTAAACTTAAACGAAAAACCATTGAAGTCGTCACCTATCCGATTATTCTCCTGGTATTTCTTT
TTGTGATGATGTTAGGGTTAAGGCATTATGTTATGCCTCAATTAGAAGCTCAAAATCAGCTTACTATTTTTCTGACTCAT
TTTCCAGCTATTTTCTTTGGTATTATCCTTTTTATAGGTGTGCTGTTAGGGGGAATTTGGCTGCATTGGCGATCGCAAAG
TCGCCTCAAACTTTTTACTCACTTCAGTGCTTATCCTGTTTTAGGGAAACTCTTACAACAGTATCTGACGGCTTATTATG
CTAGAGAATGGGGAACATTGATTGGACAGGGACTTGAATTACCAGTCATTCTGGATATTATGGCCATGGAGAAATCTTTA
TTCATGCAAGAATTGGCTGAAGATATTCGAGTTAGTTTATTGGCAGGACAAGCTTTTCATGATAAGGTAGCTACCTATCC
TTTCTTTAAAAAAGAGTTAAGTTTGATGATTACTTATGGAGAGATTAAATCCAAGTTAGGAAGTGAACTAGAGATTTATG
CTCAAGAGAGTTGGGCTCAGTTTTTTAGCCAGCTTCATCAAGCAACTCAGTTTATTCAACCGATTATCTTTTTAGTGATT
GCTCTGACGATTGTCATGATTTATGCAGCAATTTTATTACCAATTTATCAAAATATGGGAGGCGTTTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(28-146)

Type II secretion system (T2SS), protein F (T2SSF)

(214-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

55.132

99.417

0.548
  comYB Streptococcus mutans UA159

54.277

98.834

0.536
  comYB Streptococcus gordonii str. Challis substr. CH1

48.968

98.834

0.484
  comGB/cglB Streptococcus mitis NCTC 12261

46.567

97.668

0.455
  comGB/cglB Streptococcus mitis SK321

45.946

97.085

0.446
  comGB/cglB Streptococcus pneumoniae Rx1

44.444

97.085

0.431
  comGB/cglB Streptococcus pneumoniae D39

44.444

97.085

0.431
  comGB/cglB Streptococcus pneumoniae R6

44.444

97.085

0.431
  comGB/cglB Streptococcus pneumoniae TIGR4

44.444

97.085

0.431
  comGB Lactococcus lactis subsp. cremoris KW2

43.363

98.834

0.429