Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K6974_RS06955 Genome accession   NZ_CP082204
Coordinates   1364179..1364640 (-) Length   153 a.a.
NCBI ID   WP_222337512.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1365102..1366355 1364179..1364640 flank 462


Gene organization within MGE regions


Location: 1364179..1366355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS06955 (K6974_06900) ssb 1364179..1364640 (-) 462 WP_222337512.1 single-stranded DNA-binding protein Machinery gene
  K6974_RS06960 (K6974_06905) - 1365102..1366355 (+) 1254 WP_014637301.1 IS110 family transposase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16982.55 Da        Isoelectric Point: 5.1596

>NTDB_id=599990 K6974_RS06955 WP_222337512.1 1364179..1364640(-) (ssb) [Streptococcus suis strain FJSM5]
MINNVVLVGRLTKDAELRYTPSNVAVATFTLAVNRNRKNENGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVADSFQLLESRGQQSQGNSFQNGNSNSGNFQNGNNQGGYQSPFGNSNTMDISDDDLPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=599990 K6974_RS06955 WP_222337512.1 1364179..1364640(-) (ssb) [Streptococcus suis strain FJSM5]
ATGATCAATAATGTTGTACTGGTTGGAAGATTGACCAAGGACGCAGAGCTCAGGTACACGCCATCTAATGTAGCGGTAGC
AACGTTCACTCTTGCCGTCAATCGCAACCGAAAAAACGAAAATGGAGAGCGTGAGGCTGATTTTATTAACTGTGTGATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGGGCTCTGATTGGTGTTACAGGTCGCATTCAGACTCGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGACAGTTTCCAACTCTTGGAAAGTCGTGG
TCAACAGAGCCAGGGGAACTCTTTCCAAAATGGAAATTCAAATAGTGGTAATTTCCAAAACGGAAACAACCAAGGAGGCT
ATCAGTCCCCATTTGGTAACTCAAATACTATGGACATCTCTGATGATGACCTGCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.382

100

0.66
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.66
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.867

73.856

0.405
  ssb Glaesserella parasuis strain SC1401

32.597

100

0.386
  ssbB/cilA Streptococcus pneumoniae TIGR4

52.727

71.895

0.379
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.727

71.895

0.379
  ssbB/cilA Streptococcus pneumoniae Rx1

51.818

71.895

0.373
  ssbB/cilA Streptococcus pneumoniae R6

51.818

71.895

0.373
  ssbB/cilA Streptococcus mitis SK321

51.818

71.895

0.373
  ssbB/cilA Streptococcus pneumoniae D39

51.818

71.895

0.373
  ssbB/cilA Streptococcus mitis NCTC 12261

51.818

71.895

0.373